RNA id: TCONS_00003228


Basic Information

Item Value
RNA id TCONS_00003228
length 1704
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id XLOC_000748
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 55437572 ~ 55439275 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTTAAGATGATCTTGTACAGACCCAGGAAGAGGAAGACCTGAGGATCTCATTTGAGCGTCGACACTGAGACACTGCAGCACGGTAAGAGCATTTCAACACTAAAATAATTCTGTTGATCTACGGTTGATATCTGTATGAAGGCATCTGCTGAATGTTGATTTGAGGAGTTACAGAAGCTCAATAACTGTTATAAATACAGATGTTGTGGTCAGGGCCGCTCAGGCTCCAGGTGAGATTCTAGATGATGTAGTTCCTCCTCAAAACAACAAGAGTTTCTGCAAATGCTGATCTGTTGTGAAGCTCAGCTGACACGCTCAGTACAGAGAGACAAGTTTGATCCTGAAGAGTCTCAGTCCTGCAGAGTTTCTCTcaaaccccaatcaaacacatctgaacaaacCAGTCCAGCTTTAAGAGTTTCTCCAAAACTACAGGAAGACCAGCTTTAtcaaaactctgcaggactgGAGACTAATGAGACGTGAACCAAACTGAAGAATCAAACAACACTTCAAATACTTTATTCCCCCAgagattattagattattatcaGTGTGTGTGGGTTTATTTGGTTGTGTGCTGCTGTGAAAACAGGGTGTTTACTggtgattgtgtgtgtttggtttggtCAGGATGTTGATTCTGTGTCTCTCGCTCTTGATCACTAAAGCTGAGTCAGAATccaaatataaaatcaaaaacaaagaGCAAAGTCAGATCATGTCAGAAATGATCCTGTTCTCCATCTACAGTCTGTTCACACAATAGAGTTTGTGCTGTTGTGTAGAGATGATGCTCATACTGTCATATTTGTCATTTGTAGGATTGCAGAAGTCACTATGTTGAGGTCTTTCAGAGCATCTCTTCCTCTGATCTTAGTGATCATGACTGCGGGTGAGTTTTCACTACAGTCACTATAGACAAACTTTAACACTCTTGAGAAGCTGACTGAGCTCCTCACACTTTGTGTCTCAGAAACTGACAGCAGTGTTTTACTGACAGAGACAATAAAAAAGGTCAAAAGtgattaaattttaaaacaatttaaaaactggaaaaaaaattcaaataaattgtaaaagtttgtttgtttaatgcttttcacaataatgatCATTCTAAAGCTGCTTCACAAACGTGCACACTATTACTGCACAACCAAAATCAGCAAGAGTTAGTGTGCTGTGTATAGGGTGGACAGTATATAGAGTCAACCTGCAGTTATACAATAATGTGTACTTTTCAAAGAGGTGACGTATATGcggtttatttatattatacatctttatgtattattattggcatttgtaagagaaatttgagatctgaaaaagtgcacacatacggcctctggcggatttgcaaatataaaaaaatgcacaaaaaaaaaaaaaaaaaaacgtacttcctgggacgtattttgctctctacAGAAATGCATACTGTGGTACGTATCCATGATGAGTCTGGGTTGAAAAAGAGATTTGGTGTAGCTGCTGTTAATATTTTAAGTGAGATATAAATGTGAATATGAAAGGATGCATTTGATGAGATGCATTTCACTGGACATAAACGTATGGGATGGATTGTGTATATGCTTTACTCAAAGAGAAGCCTGTAATCTACTTTTAAACTagtttataaatgtttgttttgtgcatgtctgtgtttCAGGGTGTGATGGTCAGCAGGATTGGGGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002883 lncRNA upstream 29872 55370138 ~ 55407700 (+) False XLOC_000745
TCONS_00003225 lncRNA upstream 44540 55392380 ~ 55393032 (+) True XLOC_000747
TCONS_00002884 lncRNA upstream 52121 55385192 ~ 55385451 (+) True XLOC_000746
TCONS_00002882 lncRNA upstream 67733 55369517 ~ 55369839 (+) True XLOC_000744
TCONS_00003220 lncRNA upstream 93721 55326566 ~ 55343851 (+) False XLOC_000742
TCONS_00003229 lncRNA downstream 4118 55443393 ~ 55477135 (+) False XLOC_000745
TCONS_00003230 lncRNA downstream 4208 55443483 ~ 55477135 (+) False XLOC_000745
TCONS_00003231 lncRNA downstream 17088 55456363 ~ 55477135 (+) False XLOC_000745
TCONS_00003232 lncRNA downstream 36624 55475899 ~ 55477135 (+) False XLOC_000745
TCONS_00003233 lncRNA downstream 227587 55666862 ~ 55667360 (+) True XLOC_000757
TCONS_00001237 mRNA upstream 83594 55348537 ~ 55353978 (+) True XLOC_000743
TCONS_00001236 mRNA upstream 126869 55304374 ~ 55310703 (+) True XLOC_000740
TCONS_00001232 mRNA upstream 138399 55293424 ~ 55299173 (+) False XLOC_000739
TCONS_00001235 mRNA upstream 138404 55294009 ~ 55299168 (+) True XLOC_000739
TCONS_00001231 mRNA upstream 150312 55279124 ~ 55287260 (+) True XLOC_000738
TCONS_00001238 mRNA downstream 13617 55452892 ~ 55453752 (+) True XLOC_000749
TCONS_00001239 mRNA downstream 36727 55476002 ~ 55477135 (+) True XLOC_000745
TCONS_00001240 mRNA downstream 39378 55478653 ~ 55515184 (+) True XLOC_000750
TCONS_00001241 mRNA downstream 96552 55535827 ~ 55540577 (+) True XLOC_000751
TCONS_00001242 mRNA downstream 124257 55563532 ~ 55574266 (+) True XLOC_000752
TCONS_00001233 other upstream 140321 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 308993 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 1251416 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 1376362 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 2049691 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001304 other downstream 1908623 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 2720876 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 3692017 59131292 ~ 59131406 (+) True XLOC_000888