RNA id: TU176960


Basic Information

Item Value
RNA id TU176960
length 2403
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G155851
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8589386 ~ 8593261 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACATGTTGATAACATAACATTGTTAGCATTTTTCTAACATGAATTAACACATTGCTAACATGATTTAACAAGTGGTTTACATGTTTCTACCATGAATTAGCACATTGATAGCATGATTTTGTACATTGCTAGCCTGAATTAGCATGTTGATAGCATGAATGAACACATTGCTAGCATGTTTTAGTATGTTGCTAACCCAAATTAGCATGTTGCTAATATAACATAGCATGATATACCATGAATTAATATAATATAGCATGAATTAGCATTTTTTAACATTGTTAACATTAATTAGCATGTTTTAACACACTGTAACATGATTTAGCATGTTGCTAACATGTTTTAACATGTTTTACTACATTGCTACCAAGAATTAACACATTGCTAGCATGATATAGCATGTTGATGCCATGTTCTAACACATTGTTAACATGTTTTAAAATGTCGATAGCATAAATTAGCAAGTTTTAACACATTGCTAGCATTAAAAAGCATGTTGTTAGCATGTTTTATCACGTTGTTGACATGAATTAGCTATTTTTTAACATTGCTAACATTAATTAGCATATTTGAACACATTGCAACATGATTTAACATGTTGCTTACATGTTTTAGCACATTTGCTAACATGTTTTACCACATTGCTAGCATGATATAGCATGTTGATATCATGTTTTAACATTGCTAACATGAAATAGCATGTTTTAGCAAATCGGTAGCATGAATTAGCCTGTTTTAACATATTGCTAGCATGAAATAGCATGTTCTTAGCATGTTTTAGCACATTGCTAACATGAAATAGCATGTTGTTACCATGTTAGCATGTTTTAACACATTATTAGCATGTTTTAGCACATTGCTAGCATTTTGCAAGCTAACATAATTATATCATTTCAATAAAAATGATTGTAAAGTGCAACCAGAGCACATGTAAAACTGCTACAAGTAAAATGTGCAAAAAATGTGACAACTTGAAACAGGATAAAGTCAAAGAAATCAATTTGGTTCACTGGTATGAATGTCTCATGCATTCAGAAGTGCTCAATCACGACCACATGCAAAAAGTGCCGCATCACCTTTGCTTTAGTCAGATCTGCTGCACAAACAGCTGTGAAACATTAAATGCATGTACATGTAGCTTTGCCCGGGATCTTGAAATGGAAGTTCTAGGAATTAGTAACTTGTTCTGAGTATCAACAATAACACCTCAATGTTTCCTTTGTTCTGTTTCTCTCATAATTAAACCCGGCGTGTCTTTCAGCCTCCCGCCTCCTTATGTAACAAAACAGTGTGCAATTATGCAAACATCTAAAGAACCTGGTCTGCAAACAAACAAGCCCAATTTACTCCTGAGTTATTCTCATGCATTCATTTTCGAATCCATAAAAATACCCTGTTGCAATGCTTTTGAGTGACTGCTCAGTGAAAAGCATTCTTCTGCAGTCTTACATTAAGACTAATAATAGTTTTAATAGGTCTGTAAATAAAGGCTGTTTAAGAGCGGATTAAAATGACTGCGAATGGTGTAATTAAAATTCAGTGGTGAGGTTTGAACTTGGCAGAACTTGACTGCACTTCACAACCTTCAGCACAAAGCACATTCACGTTTGCTTGGGCGAAGCTCGGGTTTATTAAGGATGTGATTTGAAACCACTCGACTCATTCAGCCTGGAGAATAATGTGAACTATAGACGAGAACATGATGCACAATTATTACACATTCATCTACATGTATTTACATATAAATTGTTATACAATTTTCAGCAGTTAATACAGGTCTAATCGCTTCACATGCTTTATTTTGTAGATAATATCAGACTTTTCTGGTTGTTTTGAATACTTTTTTTTTTTTATAAATTGATACTTATATTCATCAAGGATGCATTAAATTGATCAAAAGTTACAGTAAAGACATTTATAATGTTACAAAAGATTCTATTTCAAATAAATGCTGTTCTTTTGAACTTTCTATTCATCAAAGAATCCTGAAAAATAAAATAAGATAATACAATAAAATAAGTAACACAAAAACTACCCAAACGCTGGGTTGTTACGTCTGACCCAGGATCTGTGTAACACAAAAACTACCCAAACGCTGGGTTGTTACGTCTGACCCAGGATCTGTGTAACACAAAATCGACCCAAACGCTGGGTTGTTACGTCTGACCCAGGATCTGTGTAACACAAAAACTACCCAAACGCTGGGTTGTTACGTCCGACCCAGGATCTGTGTAACACAAAAACTACTCAAACGCCGGGTTGTTACGTCCGACCCAGGATCTGTGTAACACAAAAACTACCCAAACGCTGGGTTGTTACGTCTGACCCAGGATCTGTGTAACACAAAAACTACCCAAACGCTGGGTTGTTACGTCTGACCCAGGATCTGAGTAACACAAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176956 lncRNA upstream 21473 8567615 ~ 8567913 (+) True G155848
TU176952 lncRNA upstream 21939 8566307 ~ 8567447 (+) False G155845
TU176953 lncRNA upstream 21939 8566362 ~ 8567447 (+) True G155845
TU176904 lncRNA upstream 147035 8442140 ~ 8442351 (+) True G155809
TU176859 lncRNA upstream 205045 8382868 ~ 8384341 (+) True G155769
TU176964 lncRNA downstream 286 8593547 ~ 8593956 (+) True G155855
TU176962 lncRNA downstream 1301 8594562 ~ 8595141 (+) True G155853
TU176969 lncRNA downstream 2973 8596234 ~ 8597704 (+) True G155860
TU176975 lncRNA downstream 9551 8602812 ~ 8603042 (+) True G155866
TU176976 lncRNA downstream 11571 8604832 ~ 8605058 (+) True G155867
CI01000029_08578097_08583564.mRNA mRNA upstream 5413 8577815 ~ 8583973 (+) True CI01000029_08578097_08583564
CI01000029_08558693_08564749.mRNA mRNA upstream 24390 8558263 ~ 8564996 (+) True CI01000029_08558693_08564749
CI01000029_08533907_08555317.mRNA mRNA upstream 33417 8533907 ~ 8555969 (+) True CI01000029_08533907_08555317
CI01000029_08506379_08516187.mRNA mRNA upstream 73081 8506379 ~ 8516305 (+) True CI01000029_08506379_08516187
CI01000029_08484998_08502958.mRNA mRNA upstream 86217 8484952 ~ 8503169 (+) True CI01000029_08484998_08502958
CI01000029_08654610_08655443.mRNA mRNA downstream 59321 8652582 ~ 8656550 (+) True CI01000029_08654610_08655443
CI01000029_08743604_08749941.mRNA mRNA downstream 147473 8740734 ~ 8750337 (+) True CI01000029_08743604_08749941
CI01000029_08759743_08761002.mRNA mRNA downstream 166482 8759743 ~ 8761194 (+) False CI01000029_08759743_08761002
CI01000029_08915550_08920146.mRNA mRNA downstream 321162 8914423 ~ 8920358 (+) True CI01000029_08915550_08920146
CI01000029_08990637_09003719.mRNA mRNA downstream 397296 8990557 ~ 9003779 (+) True CI01000029_08990637_09003719
TU176707 other upstream 657209 7931480 ~ 7932177 (+) True G155627
TU176602 other upstream 951552 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 1681954 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 2099092 6431535 ~ 6490294 (+) False G155083
TU177125 other downstream 371557 8964818 ~ 9064541 (+) False G156007

Expression Profile