RNA id: TU176961


Basic Information

Item Value
RNA id TU176961
length 291
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G155852
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8672979 ~ 8673500 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGGGTTGTTACGTCTGACCCAGGATCTGGGTAACACAAAAACTACCCAAACGCTGGGNNNNNNNGTCTGACCCAGGATCAGGGTAACACAAAAACTACCCAAACACTGGGTTGTTACGTCTGACCCAGGATCTGGGTAACACAAAAACTACCCAAACGCTGGGTTGTTACGTCTGACCCAGGATCTGAGTAACACAAAAACTACCCAAACGCTGGGTTGTTACGTCTGACCCAGGATCTGGGTAACACAAAAACTACCCAAACCCCGGGTTGTTACGTCTGACCCAGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176976 lncRNA upstream 67921 8604832 ~ 8605058 (+) True G155867
TU176975 lncRNA upstream 69937 8602812 ~ 8603042 (+) True G155866
TU176969 lncRNA upstream 75275 8596234 ~ 8597704 (+) True G155860
TU176962 lncRNA upstream 77838 8594562 ~ 8595141 (+) True G155853
TU176964 lncRNA upstream 79023 8593547 ~ 8593956 (+) True G155855
TU177040 lncRNA downstream 44054 8717554 ~ 8717870 (+) True G155930
TU177041 lncRNA downstream 45300 8718800 ~ 8719027 (+) True G155931
TU176855 lncRNA downstream 54163 8727663 ~ 8729423 (+) True G155765
TU176856 lncRNA downstream 58353 8731853 ~ 8736093 (+) True G155766
TU177044 lncRNA downstream 66521 8740021 ~ 8740233 (+) True G155934
CI01000029_08654610_08655443.mRNA mRNA upstream 16429 8652582 ~ 8656550 (+) True CI01000029_08654610_08655443
CI01000029_08578097_08583564.mRNA mRNA upstream 89006 8577815 ~ 8583973 (+) True CI01000029_08578097_08583564
CI01000029_08558693_08564749.mRNA mRNA upstream 107983 8558263 ~ 8564996 (+) True CI01000029_08558693_08564749
CI01000029_08533907_08555317.mRNA mRNA upstream 117010 8533907 ~ 8555969 (+) True CI01000029_08533907_08555317
CI01000029_08506379_08516187.mRNA mRNA upstream 156674 8506379 ~ 8516305 (+) True CI01000029_08506379_08516187
CI01000029_08743604_08749941.mRNA mRNA downstream 67234 8740734 ~ 8750337 (+) True CI01000029_08743604_08749941
CI01000029_08759743_08761002.mRNA mRNA downstream 86243 8759743 ~ 8761194 (+) False CI01000029_08759743_08761002
CI01000029_08915550_08920146.mRNA mRNA downstream 240923 8914423 ~ 8920358 (+) True CI01000029_08915550_08920146
CI01000029_08990637_09003719.mRNA mRNA downstream 317057 8990557 ~ 9003779 (+) True CI01000029_08990637_09003719
CI01000029_09058596_09061088.mRNA mRNA downstream 385096 9058596 ~ 9061323 (+) True CI01000029_09058596_09061088
TU176707 other upstream 740802 7931480 ~ 7932177 (+) True G155627
TU176602 other upstream 1035145 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 1765547 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 2182685 6431535 ~ 6490294 (+) False G155083
TU177125 other downstream 291318 8964818 ~ 9064541 (+) False G156007

Expression Profile