RNA id: TU177211


Basic Information

Item Value
RNA id TU177211
length 292
lncRNA type intronic
GC content 0.31
exon number 1
gene id G156087
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 9116632 ~ 9116923 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAATGATGGAGCTATCTACTGTGAAAGAGAGGCGATGAGAGGGAGGAACAGGAATATTTCCTGATCAGAAATGTAGAAGTGTGTTAAAATCAGTCTCAGACAATGAAAAACACACACTGTTTCAGTAGTGACATGAACATGAGGGACACATTTTTTACAGAAAGTTTCATGATTTAAATATAAAATATTTGTTTTTTAACTTCACAAAAAATATATTTTTAAAAACAATGGAAAAAACTGCAAAAATTATTTCAATATCATTTTCACAAGTTGAAATTTAGGGGTTAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177138 lncRNA upstream 14830 9096378 ~ 9101802 (+) True CI01000029_09091229_09095666
TU177153 lncRNA upstream 20458 9095931 ~ 9096174 (+) False CI01000029_09091229_09095666
TU177130 lncRNA upstream 49429 9060631 ~ 9067203 (+) True G156010
TU177126 lncRNA upstream 52091 9062738 ~ 9064541 (+) True G156007
TU177097 lncRNA upstream 235841 8880448 ~ 8880791 (+) True G155980
TU177166 lncRNA downstream 793 9117716 ~ 9118633 (+) True G156043
TU177217 lncRNA downstream 7552 9124475 ~ 9125086 (+) True G156091
TU177151 lncRNA downstream 38829 9155752 ~ 9157445 (+) True G156028
TU177231 lncRNA downstream 65516 9182439 ~ 9182656 (+) True G156099
TU177239 lncRNA downstream 91450 9208373 ~ 9208598 (+) True G156107
CI01000029_09091229_09095666.mRNA mRNA upstream 19619 9091103 ~ 9097013 (+) False CI01000029_09091229_09095666
CI01000029_09079841_09080368.mRNA mRNA upstream 35997 9078993 ~ 9080635 (+) True CI01000029_09079841_09080368
CI01000029_09058596_09061088.mRNA mRNA upstream 55309 9058596 ~ 9061323 (+) True CI01000029_09058596_09061088
CI01000029_08990637_09003719.mRNA mRNA upstream 112853 8990557 ~ 9003779 (+) True CI01000029_08990637_09003719
CI01000029_08915550_08920146.mRNA mRNA upstream 196274 8914423 ~ 8920358 (+) True CI01000029_08915550_08920146
CI01000029_09132920_09139682.mRNA mRNA downstream 15647 9132570 ~ 9140319 (+) True CI01000029_09132920_09139682
CI01000029_09142383_09143514.mRNA mRNA downstream 25408 9142331 ~ 9143528 (+) True CI01000029_09142383_09143514
CI01000029_09146276_09147817.mRNA mRNA downstream 29301 9146224 ~ 9147831 (+) True CI01000029_09146276_09147817
CI01000029_09159075_09162036.mRNA mRNA downstream 42152 9159075 ~ 9162464 (+) True CI01000029_09159075_09162036
CI01000029_09166838_09170965.mRNA mRNA downstream 49915 9166838 ~ 9170980 (+) True CI01000029_09166838_09170965
TU177125 other upstream 52091 8964818 ~ 9064541 (+) False G156007
TU176707 other upstream 1184455 7931480 ~ 7932177 (+) True G155627
TU176602 other upstream 1478798 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 2209200 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176099 other upstream 2626338 6431535 ~ 6490294 (+) True G155083

Expression Profile