RNA id: TU177241


Basic Information

Item Value
RNA id TU177241
length 509
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G156109
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 9227251 ~ 9227785 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATCAAACATTTTATATTTAGTACAAGTTTTTAAAATATTACAACATTTTCCATGTTTTATAGCGGTTGTACCGAATGACCTGATGTTTCGGGACATGCGTATGATCAAGTGAAAACATGAATCAAATAGTTAAGAGAGAGTTAGTTACTTTGCTTCACGACCATGTGGTCCTTTGCAGGTGTCTGAATGATGTCACATCCTGTCACATGATACTGACCACATGACTTGATCCAAAATGGTCCCTTTATATTGGTTACTCCGAATGACATCAATGAAATTCATTTTTCCGGACATTCTTTCTCATAACAAAGCAGCGACTTCTACACATAATTTTAATACCATTTTGCACTATGTTGATATAAAAAATATATACATTTATTACATTTTAAGATATTTTAATCACAAATGAAATGACTGTATTGGCCTTTGGACGGTTAAACCGAATGACCTTTTGACACTTCAAAATCTTTAAAATACCTTTATATGTAGAAAAATATAATTAAAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177239 lncRNA upstream 18653 9208373 ~ 9208598 (+) True G156107
TU177231 lncRNA upstream 44595 9182439 ~ 9182656 (+) True G156099
TU177151 lncRNA upstream 69806 9155752 ~ 9157445 (+) True G156028
TU177217 lncRNA upstream 102165 9124475 ~ 9125086 (+) True G156091
TU177166 lncRNA upstream 108618 9117716 ~ 9118633 (+) True G156043
TU177244 lncRNA downstream 11470 9239255 ~ 9239481 (+) True G156112
TU177245 lncRNA downstream 12297 9240082 ~ 9240339 (+) True G156113
TU177247 lncRNA downstream 22279 9250064 ~ 9250270 (+) True G156115
TU177248 lncRNA downstream 22626 9250411 ~ 9250652 (+) True G156116
TU177142 lncRNA downstream 23413 9251198 ~ 9257562 (+) True G156019
CI01000029_09196479_09205243.mRNA mRNA upstream 21834 9195064 ~ 9205417 (+) True CI01000029_09196479_09205243
CI01000029_09183609_09186199.mRNA mRNA upstream 40778 9183033 ~ 9186473 (+) True CI01000029_09183609_09186199
CI01000029_09166838_09170965.mRNA mRNA upstream 56271 9166838 ~ 9170980 (+) True CI01000029_09166838_09170965
CI01000029_09159075_09162036.mRNA mRNA upstream 64787 9159075 ~ 9162464 (+) True CI01000029_09159075_09162036
CI01000029_09146276_09147817.mRNA mRNA upstream 79420 9146224 ~ 9147831 (+) True CI01000029_09146276_09147817
CI01000029_09272016_09280223.mRNA mRNA downstream 44196 9271981 ~ 9280885 (+) True CI01000029_09272016_09280223
CI01000029_09284343_09295992.mRNA mRNA downstream 56558 9284343 ~ 9295992 (+) True CI01000029_09284343_09295992
CI01000029_09297723_09298362.mRNA mRNA downstream 69938 9297723 ~ 9298604 (+) True CI01000029_09297723_09298362
CI01000029_09322744_09351108.mRNA mRNA downstream 94959 9322744 ~ 9351748 (+) True CI01000029_09322744_09351108
CI01000029_09483322_09486962.mRNA mRNA downstream 255537 9483322 ~ 9486962 (+) True CI01000029_09483322_09486962
TU177125 other upstream 162710 8964818 ~ 9064541 (+) False G156007
TU176707 other upstream 1295074 7931480 ~ 7932177 (+) True G155627
TU176602 other upstream 1589417 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 2319819 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176099 other upstream 2736957 6431535 ~ 6490294 (+) True G155083

Expression Profile