RNA id: CI01000030_01733476_01734513.mRNA



Basic Information


Item Value
RNA id CI01000030_01733476_01734513.mRNA
length 1347
RNA type mRNA
GC content 0.38
exon number 3
gene id CI01000030_01733476_01734513
representative True

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 1732804 ~ 1734663 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTTAAAAGAGGCCGTTTAGAACAATTCTCCGTCTACACTGGAAAGACGCCACTTTTCGCACAAGTTTACGTGAACACAATCCTCTTAAGAGTAATCACCCACCTCGGGCTTTCACAAACAGACTCACGCTGATCTACTCAGAGGAGAGAGCGAGTCTTGGCATTTTAAACAACATGCAAAAGGTTTGCAAACCAGTTCCCACTATAGCTAAAGTGGCTAACAAGAACTATGAGTAAAACAGGACATACAATGAGGAAAAAAGTGGCGTGGCTTGATTTTATCTATATTTTTATATTTATATATAATTTATTTACATTTTTATTATTTAAATATAAAATTATATGTGTGTATATATATATATATATATATATATATATATATTATTGTACAATAATAAAATATATAAATATATATTATTATTTATATTTATCTATATTTTTTCTATAGTTCCCACTATAGCTTATCTGGCTAACAAGAACTATGAGTAAAACAGGATATTCAATGAGGAAAAAGGGGCAGGGCTTTATTTTTTCAGCCAGAAATCGATTGGACCATAACAGAATGGAGCCAGACGAGAATTAGCTAAATTTATTTCATTTTGATTAGGATTATGATTAATAATTATTCTCAGAATAATACACACTGATCAGGAATGTGTATTAAGTTAGGCCATGGTTCCAATAACCTGGATAACATTCAGGATATGTACATGTATATTTCCGGATGTGTTGGGAAACGTGAGCAGTACACTCACCATTTTCTGGCTGGTCCTTGATGTCGCCTTCACTGGGCTGGTTCGGACTTTCAGACTGTCCGGTTTCTGTAGAAAGACACACAAAGAGAGAGAGAACTTAGATAGTAAACGTCTAGTCCAGAGTAACAAGAGTACCAAGGATGCCTGTGCTGACCGTGCAGTCTGGCTGCCAACCGCACACTGGCCGTGCAGCCGAGGCACTTATGGAAATAAGTCTAGAGAGAGAAATCCTTCAGACCTGGGTGTACTGCATAAAAAAGGCCCTATAAATTTGATGGGCTCTGATTTCTCCCAAGAAGTGCTCTTTAACGGTGCCATTAGCTGCGATAGCAATGCTTCGTGCCTAGACAGTAAGGGAACTTTCGCAAAGATTCACCCCGTTCACTTTAACTCTTCTACGACAGCCAAAAACGGCAAAGAAACACCCTTTAGGATGATTTAGACGCTGGGGTGAGTATTGATTTGACACTGGAGATAAAATAGTCGTGCTGGGAGAAATATTACCTATGTCGCGCTGGTGACCACCCAAAACAAAATGGCTGCCAAATCTGAATCATGACTTTTCTCACTTCACTTTTTTGCAAAATATATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU179058 lncRNA upstream 48336 1602530 ~ 1603265 (+) True G157709
TU178993 lncRNA upstream 214031 1493902 ~ 1518773 (+) True G157649
TU178975 lncRNA upstream 264949 1467424 ~ 1467855 (+) True G157631
TU178974 lncRNA upstream 265239 1467222 ~ 1467565 (+) False G157631
TU178911 lncRNA upstream 454742 1277295 ~ 1278062 (+) True G157572
TU179214 lncRNA downstream 86625 1821288 ~ 1821735 (+) True G157853
TU179217 lncRNA downstream 89041 1823704 ~ 1823918 (+) True G157856
TU179218 lncRNA downstream 92078 1826741 ~ 1827034 (+) True G157857
TU179216 lncRNA downstream 175541 1910204 ~ 1910604 (+) True G157855
TU179855 lncRNA downstream 240283 2042042 ~ 2042057 (+) True G158393
CI01000030_01683292_01689297.mRNA mRNA upstream 43433 1682016 ~ 1689371 (+) False CI01000030_01683292_01689297
CI01000030_01636207_01648294.mRNA mRNA upstream 84201 1636207 ~ 1648603 (+) True CI01000030_01636207_01648294
CI01000030_01514203_01515696.mRNA mRNA upstream 216329 1511645 ~ 1516475 (+) True CI01000030_01514203_01515696
CI01000030_01504763_01508773.mRNA mRNA upstream 223800 1504698 ~ 1509004 (+) True CI01000030_01504763_01508773
CI01000030_01480370_01481206.mRNA mRNA upstream 251102 1480038 ~ 1481702 (+) True CI01000030_01480370_01481206
CI01000030_01735473_01743982.mRNA mRNA downstream 101 1734764 ~ 1744746 (+) True CI01000030_01735473_01743982
CI01000030_01749399_01752421.mRNA mRNA downstream 14241 1748904 ~ 1752518 (+) True CI01000030_01749399_01752421
CI01000030_01818694_01832525.mRNA mRNA downstream 81099 1815762 ~ 1832948 (+) True CI01000030_01818694_01832525
CI01000030_01835873_01839144.mRNA mRNA downstream 100857 1835520 ~ 1839180 (+) True CI01000030_01835873_01839144
CI01000030_01875455_01901837.mRNA mRNA downstream 140792 1875455 ~ 1902005 (+) True CI01000030_01875455_01901837
TU179078 other upstream 94577 1636867 ~ 1638227 (+) True G157726
TU178650 other upstream 726117 1003889 ~ 1006687 (+) False G157332
TU178651 other upstream 726117 1003889 ~ 1006687 (+) True G157332
TU178522 other upstream 1376321 327649 ~ 356483 (+) True G157227
TU178385 other upstream 1585951 116156 ~ 146853 (+) True G157108
TU179965 other downstream 544450 2279113 ~ 2279192 (+) True G158493
TU179886 other downstream 861213 2595876 ~ 2614293 (+) True G158416
TU180187 other downstream 1278793 3013456 ~ 3013518 (+) True G158703
TU181300 other downstream 2697137 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 2782115 4516778 ~ 4517107 (+) False G159816

Expression Profile