RNA id: TU180187


Basic Information

Item Value
RNA id TU180187
length 63
RNA type TUCP
GC content 0.36
exon number 1
gene id G158703
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3013456 ~ 3013518 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGAGCAGATCGATCAAATTTTATCTTGAGGTAGGATGAAACACCTGCTACTGTACATCTCATGTCTGATGGAAATCCGATCTGTCAGTGTGGGAGTTGTCGCCATCAAATCTGTCAGCACCGGCCTGTACTTAGCTATGTCCAAAAAGGGAACACTCTTCGGATCGGTCAGATACAACCCCAGCTGCAAGTTCAAAGAGCGCATCGAAGAGAACGGCTATAACACCTACGCCTCCCTGCGCTGGAAGCACAAGGGGAGGCAGATGTTCGTGTCGCTGAATGGCCGAGGGAAACCCCGCAGAGGCCACAAAGCTAGACGGAGACACCCATCTACTCATTTCCTCCCTATGCTGCCCACATAGCTGGACTTTTCCTCATGAGCAATGCTATGCCATCTGCATTTGATGGGGACTTATTACATGTTATTAAGTTCTTATTTGTCCGTTTTTGTTTTGTTTTTTTCTGAGTACTGTCGCACAGTACATTAACTTATTACTCTGTCTTCTGGCTCAACTTAAGACCCAGTAAAGTTTAAAACAAGGCTGTTAATATGATGTACAGGTTATGTATTAATGTTATTGTTGAGTTAACTAGGCATTTACTGCATCTATTTGTACTCCTATTATGGTAGATTTCTGAGAGACATCACCAACCCAGTCTCACTGGAAATACATGCCTCTACCTACATTTTTGCAAAACTCCAAAAACATACATATACATACAATTCATCACAGTTTCCAGCTGGAATGAACACTAGTGACAGCTTTTATTCCTTTTCATAGAATTTTTTTTATCTATAATAAATTGTCTTTTTCTTAAGGCAAAGAAACAAAACAAAAAAACCTTTTTACCATATTGCATGATTTGTAGGCTAATTCATTTTAATGTTTACATCACATAACCAGCTTCATACCTTACAGTCAATTATTATTATTATTATTTTTTTTTTTTTAAGATATTAATAATTTTACTCAACAAGGACACATTAAATTGATCAAAAGTGACAGTAAAGGCATAATGTAAGAAAAGATTTCTGTTTGAAACTTTTCATTCATTAAAAATCCTGAAAAAAGTATCACTTTTTTCACAAAATATTAAGCAACACAATGGTGTTCAACATTGATATTAATAAGAAGAAATATTTCTCGAGCACCAAATCAGCATATTAGAATGATTTCTGAAGAATTATGTGACACTGAAGACTGCAATGATGCTGAAAATTCAGCTTTTCCATTACAGGAATAAATGACATTTTAAAATATATTACAATAGAAAACTTGCTTTTGCTTTGTCGGTAGGATTTAGTGTACGTTGTATTCGTTTCAAAATCGACAGAGAATTAACCTTCTAGTCACTCACCTGACCATTCATTTCCGAACTGCCGTGATACGCGCAAGCAGCAAAAAGTGTCACGTTCGTTTGTTCCGGCTGAATGCGCTTTTAGTGCTATTTCACTTGGGAAATGCCGCGATAGGTGCAAAAAGCAACGCAATATCATTTTGCAAAAATACCACCACAGGCAAATTTCTTTCATGAGACTGGGTTGGACATGGTGACTGCATTTTTGAAAAGCAACTGCAGGAAGCAGTTGTTTGAAAGTTAAAAAAAAAAAAAGGTCCACAACACACTGTTGCATCTTAAAACATGAATTTGGAAACTACAGTATCAGGATGAAAGCCCTTTTCAGTATTTAAAAAAACTTAAATGCAATGTTAAATCTCAAATTTATTTCCTGTGATTGGAATGATTTAACAAAAAGAAACACGAAGGGAACATACAACTAATTGGCTGCACCACAAAAAGTCAGGTAAATGCAAACAGATTCAGTACTCAGATCAACTTTTAGCATAACAGACTTCCTGTAACACTCTGAAAAGATGTTTTTATATCCATGTGTTCTTCTGTCACATTAACATTTTTTCACAACTTGTCGCAAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180163 lncRNA upstream 43226 2968657 ~ 2970230 (+) True G158681
TU180158 lncRNA upstream 104940 2908295 ~ 2908516 (+) True G158676
TU180145 lncRNA upstream 131300 2881841 ~ 2882156 (+) True G158664
TU180141 lncRNA upstream 136461 2876743 ~ 2876995 (+) True G158660
TU180063 lncRNA upstream 306295 2706948 ~ 2707161 (+) True G158585
TU180251 lncRNA downstream 106025 3149798 ~ 3150010 (+) True CI01000030_03139836_03149991
TU180259 lncRNA downstream 119470 3163243 ~ 3163472 (+) True G158767
TU180260 lncRNA downstream 128721 3172494 ~ 3177964 (+) True CI01000030_03172301_03180142
TU180266 lncRNA downstream 163225 3206998 ~ 3207286 (+) True G158774
TU180258 lncRNA downstream 168010 3211783 ~ 3212301 (+) True G158766
CI01000030_02919390_02954905.mRNA mRNA upstream 58031 2919390 ~ 2955425 (+) True CI01000030_02919390_02954905
CI01000030_02911153_02916952.mRNA mRNA upstream 96504 2909400 ~ 2916952 (+) True CI01000030_02911153_02916952
CI01000030_02891265_02897170.mRNA mRNA upstream 115014 2891111 ~ 2898442 (+) True CI01000030_02891265_02897170
CI01000030_02843446_02856037.mRNA mRNA upstream 157240 2843446 ~ 2856216 (+) True CI01000030_02843446_02856037
CI01000030_02705058_02731134.mRNA mRNA upstream 282305 2701811 ~ 2731151 (+) False CI01000030_02705058_02731134
CI01000030_03058744_03059657.mRNA mRNA downstream 12098 3055871 ~ 3059667 (+) True CI01000030_03058744_03059657
CI01000030_03060378_03062683.mRNA mRNA downstream 16554 3060327 ~ 3063096 (+) True CI01000030_03060378_03062683
CI01000030_03066708_03068158.mRNA mRNA downstream 22884 3066657 ~ 3068230 (+) True CI01000030_03066708_03068158
CI01000030_03070497_03070798.mRNA mRNA downstream 26682 3070455 ~ 3071137 (+) True CI01000030_03070497_03070798
CI01000030_03086334_03087738.mRNA mRNA downstream 42561 3086334 ~ 3087800 (+) True CI01000030_03086334_03087738
TU179886 other upstream 399163 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 731086 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 1375229 1636867 ~ 1638227 (+) True G157726
TU178650 other upstream 2006769 1003889 ~ 1006687 (+) False G157332
TU178651 other upstream 2006769 1003889 ~ 1006687 (+) True G157332
TU181300 other downstream 1388027 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 1473005 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 4156162 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 4810312 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 5194192 8237965 ~ 8239604 (+) True G162088

Expression Profile