RNA id: CI01000030_03060378_03062683.mRNA



Basic Information


Item Value
RNA id CI01000030_03060378_03062683.mRNA
length 1112
RNA type mRNA
GC content 0.40
exon number 5
gene id CI01000030_03060378_03062683
representative True

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3060327 ~ 3063096 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATTTATACCGTGTTTAGCCAGCAAGAGCTCATCGACCGTCTTCTTCATCATGACCATCATCATCTCTCTGCTCCTGCTGGCCTCTCTGCTGCCACACCTGACCTTCACTGCTCGTATGAATGTGGGTATAGTGAACGGCAGAGAAGCAAAACCTCACTCCAGGCCTTACATGGTTTCTGTCCAAGCGAAGAAGCAACATATCTGCGGTGGATTCCTCATTTCTGATAGATTTGTCATGACTGCTGCACACTGCAGAGAAATTTTTTCAGTCCTGACAGTTGTGCTAGGTGCACATGACCTACAACAAACGAATTTGGACCGAATCAAAGTGGATTTCTACCATGAGCATCCGAACTATAACAAGAAAACCTTTCATAATGACATTATGCTTTTGAGGCTAGAAAAACATGTGGAACTAAACGACAATATCAAGTGGATATCCATACCAATGAAAGAAGATGATATCGAAGCAGATACTGTTTGTAGTGTCGCAGGATGGGGAAGTTTAAAAACAAATGGGACAGGAAACAACCGTCTCATGGAGACAGATGTGACAGTCTTGAATAACAAGGAATGTGAAACTCATGTGGATATAGTGAATGGCAAGGAAGCCAAACCCCACTCTAGACCTTACATGCTTTCTCTTCAGAAAAACATATCTGCGGTGGATTCCTCATTTCTGATGAGTTTATGTTGACCGTGGCACATTGCCGAAACAAGTAAGACTGTAGTTTTGTCTGAGCTAAAATCATGAATTTTCAATTAAATTCAATTCGCATTTATTTGTATAGCGCGTTTCACAATACATATCGTTTCAAAGCAACTTTACAGAAAAATGCATGTTTCTACATTACAATTTAGAGTAATCTGTTATCAGCGGTGACTGTGTCCAAGTAATGTCCATATGTCAAAAATATAAAGTACTAAAATAATACAAATCATGCAGTTAGCTAAAATCATGCATTCAGTTAAGCAGAAACAATGAGGTTGGTGTAAAAAAGGCCACACACAGGATATATTCATGTGCCTTAGTTTCTCTTGCGTTACAGTAAATTCGACACACACATATGCAAAACAGCATCTCTTCAGTGTACTGAGTTTGTGGTGACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU180163 lncRNA upstream 90097 2968657 ~ 2970230 (+) True G158681
TU180158 lncRNA upstream 151811 2908295 ~ 2908516 (+) True G158676
TU180145 lncRNA upstream 178171 2881841 ~ 2882156 (+) True G158664
TU180141 lncRNA upstream 183332 2876743 ~ 2876995 (+) True G158660
TU180063 lncRNA upstream 353166 2706948 ~ 2707161 (+) True G158585
TU180251 lncRNA downstream 86702 3149798 ~ 3150010 (+) True CI01000030_03139836_03149991
TU180259 lncRNA downstream 100147 3163243 ~ 3163472 (+) True G158767
TU180260 lncRNA downstream 109398 3172494 ~ 3177964 (+) True CI01000030_03172301_03180142
TU180266 lncRNA downstream 143902 3206998 ~ 3207286 (+) True G158774
TU180258 lncRNA downstream 148687 3211783 ~ 3212301 (+) True G158766
CI01000030_03058744_03059657.mRNA mRNA upstream 660 3055871 ~ 3059667 (+) True CI01000030_03058744_03059657
CI01000030_03018776_03042194.mRNA mRNA upstream 18133 3018776 ~ 3042194 (+) False CI01000030_03018776_03042194
CI01000030_02919390_02954905.mRNA mRNA upstream 104902 2919390 ~ 2955425 (+) True CI01000030_02919390_02954905
CI01000030_02911153_02916952.mRNA mRNA upstream 143375 2909400 ~ 2916952 (+) True CI01000030_02911153_02916952
CI01000030_02891265_02897170.mRNA mRNA upstream 161885 2891111 ~ 2898442 (+) True CI01000030_02891265_02897170
CI01000030_03066708_03068158.mRNA mRNA downstream 3561 3066657 ~ 3068230 (+) True CI01000030_03066708_03068158
CI01000030_03070497_03070798.mRNA mRNA downstream 7359 3070455 ~ 3071137 (+) True CI01000030_03070497_03070798
CI01000030_03086334_03087738.mRNA mRNA downstream 23238 3086334 ~ 3087800 (+) True CI01000030_03086334_03087738
CI01000030_03106589_03108355.mRNA mRNA downstream 43442 3106538 ~ 3108519 (+) True CI01000030_03106589_03108355
CI01000030_03110702_03118217.mRNA mRNA downstream 47059 3110155 ~ 3118410 (+) True CI01000030_03110702_03118217
TU180187 other upstream 16554 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 446034 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 777957 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 1422100 1636867 ~ 1638227 (+) True G157726
TU178651 other upstream 2053640 1003889 ~ 1006687 (+) True G157332
TU181300 other downstream 1368704 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 1453682 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 4136839 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 4790989 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 5174869 8237965 ~ 8239604 (+) True G162088

Expression Profile