RNA id: CI01000030_03129738_03130913.mRNA



Basic Information


Item Value
RNA id CI01000030_03129738_03130913.mRNA
length 1384
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000030_03129738_03130913
representative True

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3129630 ~ 3131568 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTTAAAAAAGGAGGTGGAGTAACATGCCGCTTAATGTCTCCGCCCATATTTAAAGTATATTTATATCGTTTTTAGCCAGTGAGATCTCAGTGATTGTCATCTTCATCATGACCATCATCATCTCTTTGCTCCTGCTGGCCTCTCTGCTGCCACACCAGACCTTCACTGATATAGTAAACGGCAGGGAAGCCAAACCCCACTCCAGACCTTACATGGTTTCTCTTCAATATACCGGGCAACATATCTGTGGTGGATTCCTCATTTCTGATCAGTTTGTCTTGACTGCTGCACATTGCAGGGTCACAAAAGAGATTTTGACAGTTGTGGTTGGTGCTCATGACTTAAGTAAAAGCGAGAGTTCAGATCGCATCGGAGTGAAGTCCTACATCCCACACCCAAACTATAAACTCAAGCCTATTCAGAATGACATCATGCTTTTGAAGCTAAAGAAAAAAGTCAAACTAAACAACAACGTTAGACTGATATCATTACCAAGGGATGGAGAAGATGTGGGAACAGATACGGTCTGTATTGTTGCCGGCTGGGGAAGCCAGGTGCTTAATGGCACGGGAAGCAAAGTTCTAATGGAGGCAAGCATGACTACAATAAATCAGGCAGAATGTCAGCGTAGATGGCGATTGAGCTTCTTGACCTCACAGATGATCTGTGCATATGGCGGTGGTGGATCCTGCTCAGTATGTACAAAAGATGATTCACAGATGTTATGATAATGTACAAACTGGTTTCACTAGTGATGTGTTGATCTATCTTTCTCAACAAGGGGGATTCAGGAGGTCCTTTGGTTTGTGGAGACACTGCTGTTGGGGTCACGTCTTTTGTATATTCAAGGCTCTGCAATTCACCCAAGCGTCCTAATGTGTATACTAAGATTTCAGCATTTATTCAATGGATCCGCAAAGAAATTGGAAATATTAAGTGACTTCATGTAAACTAAAAAAGGAAGAAATGTTTTTCTTGAATTCTTCCATAAACCTCCTTCCAGAAGTTTTGGATTTTTGAACACTCCCAAAGACAGTGATATAGTGTACCTTTCTCGTCCGAACATTTAGAGCACACATCAGGAACATTAGCGGACATGTGAAGTTTGACAGGAGCTATCTGTGTTCTCATTAATCATTTATATTGAAGTAATGTAAACTTTGTGTTTGTTGTCTGTGTTTGTGCTTTTAGACAAGCATCATTCCAATCTGTCCCATCTATGTCTTCATACCCCTCATTCATGTTTTCTTTTTTACAAGGATTTAATTTATCTAATGTTGATTCAGAACTATATTTAACCATTAAGTTATATTATATAGATACACGCCCCTTCCCTTCTAAATTTCCAGGTGTTATTTCCTCTAATTTTGATAAAGGTATCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU180163 lncRNA upstream 159400 2968657 ~ 2970230 (+) True G158681
TU180158 lncRNA upstream 221114 2908295 ~ 2908516 (+) True G158676
TU180145 lncRNA upstream 247474 2881841 ~ 2882156 (+) True G158664
TU180141 lncRNA upstream 252635 2876743 ~ 2876995 (+) True G158660
TU180063 lncRNA upstream 422469 2706948 ~ 2707161 (+) True G158585
TU180251 lncRNA downstream 18230 3149798 ~ 3150010 (+) True CI01000030_03139836_03149991
TU180259 lncRNA downstream 31675 3163243 ~ 3163472 (+) True G158767
TU180260 lncRNA downstream 40926 3172494 ~ 3177964 (+) True CI01000030_03172301_03180142
TU180266 lncRNA downstream 75430 3206998 ~ 3207286 (+) True G158774
TU180258 lncRNA downstream 80215 3211783 ~ 3212301 (+) True G158766
CI01000030_03110702_03118217.mRNA mRNA upstream 11220 3110155 ~ 3118410 (+) True CI01000030_03110702_03118217
CI01000030_03106589_03108355.mRNA mRNA upstream 21111 3106538 ~ 3108519 (+) True CI01000030_03106589_03108355
CI01000030_03086334_03087738.mRNA mRNA upstream 41830 3086334 ~ 3087800 (+) True CI01000030_03086334_03087738
CI01000030_03070497_03070798.mRNA mRNA upstream 58493 3070455 ~ 3071137 (+) True CI01000030_03070497_03070798
CI01000030_03066708_03068158.mRNA mRNA upstream 61400 3066657 ~ 3068230 (+) True CI01000030_03066708_03068158
CI01000030_03132339_03134173.mRNA mRNA downstream 724 3132292 ~ 3134317 (+) True CI01000030_03132339_03134173
CI01000030_03139836_03149991.mRNA mRNA downstream 8268 3139836 ~ 3149991 (+) False CI01000030_03139836_03149991
CI01000030_03157804_03158397.mRNA mRNA downstream 26065 3157633 ~ 3159327 (+) True CI01000030_03157804_03158397
CI01000030_03172301_03180142.mRNA mRNA downstream 40687 3172255 ~ 3180536 (+) False CI01000030_03172301_03180142
CI01000030_03185116_03188245.mRNA mRNA downstream 53503 3185071 ~ 3188312 (+) True CI01000030_03185116_03188245
TU180187 other upstream 85857 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 515337 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 847260 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 1491403 1636867 ~ 1638227 (+) True G157726
TU178651 other upstream 2122943 1003889 ~ 1006687 (+) True G157332
TU181300 other downstream 1300232 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 1385210 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 4068367 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 4722517 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 5106397 8237965 ~ 8239604 (+) True G162088

Expression Profile