RNA id: TU180260


Basic Information

Item Value
RNA id TU180260
length 277
lncRNA type sense_over
GC content 0.42
exon number 3
gene id CI01000030_03172301_03180142
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3172255 ~ 3180536 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCAAACCCCACTCCAGACCTTACATGGTTTCTCTTCAGAAGAACAGGAATCATATCTGTGGTGGATTCCTAATTTCTGATCAGTTTGTCTTGACTGCTGCACATTGCTGGGGCGGATCTGAGATTCTGACGGTTCTGGTTGGTGCTCATGATTTAAATAACATCAAGAGTTCAGATCGCATCGACGTGGAGTCCTACAAACAGCATCCAAACTATTTTTTCCTTTCTGAAAAGAATGACATCATGCTTTTGAGGCTACAGGAAAAAGTCAAACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180259 lncRNA upstream 9022 3163243 ~ 3163472 (+) True G158767
TU180251 lncRNA upstream 22484 3149798 ~ 3150010 (+) True CI01000030_03139836_03149991
TU180163 lncRNA upstream 202264 2968657 ~ 2970230 (+) True G158681
TU180158 lncRNA upstream 263978 2908295 ~ 2908516 (+) True G158676
TU180145 lncRNA upstream 290338 2881841 ~ 2882156 (+) True G158664
TU180266 lncRNA downstream 29034 3206998 ~ 3207286 (+) True G158774
TU180258 lncRNA downstream 33819 3211783 ~ 3212301 (+) True G158766
TU180791 lncRNA downstream 63532 3241496 ~ 3241775 (+) True G159234
TU180792 lncRNA downstream 64247 3242211 ~ 3242652 (+) True CI01000030_03238201_03242662
TU180828 lncRNA downstream 138997 3316961 ~ 3317302 (+) True G159261
CI01000030_03157804_03158397.mRNA mRNA upstream 13167 3157633 ~ 3159327 (+) True CI01000030_03157804_03158397
CI01000030_03139836_03149991.mRNA mRNA upstream 22503 3139836 ~ 3149991 (+) False CI01000030_03139836_03149991
CI01000030_03132339_03134173.mRNA mRNA upstream 38177 3132292 ~ 3134317 (+) True CI01000030_03132339_03134173
CI01000030_03129738_03130913.mRNA mRNA upstream 40926 3129630 ~ 3131568 (+) True CI01000030_03129738_03130913
CI01000030_03110702_03118217.mRNA mRNA upstream 54084 3110155 ~ 3118410 (+) True CI01000030_03110702_03118217
CI01000030_03185116_03188245.mRNA mRNA downstream 7107 3185071 ~ 3188312 (+) True CI01000030_03185116_03188245
CI01000030_03196185_03200757.mRNA mRNA downstream 17584 3195548 ~ 3200805 (+) True CI01000030_03196185_03200757
CI01000030_03202618_03204279.mRNA mRNA downstream 24609 3202573 ~ 3205060 (+) True CI01000030_03202618_03204279
CI01000030_03218927_03220573.mRNA mRNA downstream 40963 3218927 ~ 3221005 (+) True CI01000030_03218927_03220573
CI01000030_03229393_03232355.mRNA mRNA downstream 51317 3229281 ~ 3232454 (+) True CI01000030_03229393_03232355
TU180187 other upstream 128721 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 558201 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 890124 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 1534267 1636867 ~ 1638227 (+) True G157726
TU178651 other upstream 2165807 1003889 ~ 1006687 (+) True G157332
TU181300 other downstream 1253836 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 1338814 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 4021971 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 4676121 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 5060001 8237965 ~ 8239604 (+) True G162088

Expression Profile