RNA id: CI01000030_03238201_03242662.mRNA



Basic Information


Item Value
RNA id CI01000030_03238201_03242662.mRNA
length 1013
RNA type mRNA
GC content 0.43
exon number 4
gene id CI01000030_03238201_03242662
representative False

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3237992 ~ 3242902 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTTAAAAATAAAACCAAAAGGCATTCATCTGTTCTGACATCCAAACTGTTTTTTTTTTTTTTTTTTTTTTTTTAAATCATATTGTGAGGAAGTAGTGGGGGGCAGTGGGGACACTCTGGAAACAGTTGAAAGGAGGGTAACACATTTTCAGAAAGACTGTTTCCTGTGCTTTCTCTTGGCTCTACCTTAATGGATCACATGTGCTGAAATGATGTATTGTACAGAGAAACAAAGCGTTGAAAAACTACATAGGGACTACAAAAGGCAGAAAAAGATCCCTCTTTTTAAAAGCCATGAAGACATTGAGTGGAATTTTAGGGGGAAAGGGGCAATTAGCCGGGGCCTTGAAGCAACAGTGGGTGGCGAGAGTCTTACACCACAGATGGTACCAGTCAGCTGCTCTTGGTCCGCGTGGACACAGTGGTATGCTGCCTATGCAAACATGCAAACTCAAACAAATGAAGTCTGCCTATGCTTGTCCGGGAACAACAGTATGAGGACGGCCAAAACAGAGTCCCTCAGTCGGTACTCATTGCCATATACTTTTCCCCCCTACCCTCGAGAAGAAGGAAGATGCTCTCCGTTCTCTCACACTTTTGAGTTGGGGGTTGTGCCTCATCGATGTGTTGTTCGCAGATGTCCCACATTGAACATTCCTCTATGTTCTTCTCAGCTTTGTGAGCAGTGGGTTTTAATTGAGAATTTGGGAGATGAATGCAGCGCTGTGACACCGCTGCACATTTCAAAGGATCTCCGAATCTGGCAGCTGTAAACAAAGCAGATAAAAAAGATAAATGTTCTTGCATTGGGCCATACACAAATGATTAGTTGCCTACTTCAAAAGCGCCACACTGGGGGGGCTAAGAATGCTTTGCATGGCCCATTTGGGCATTAGACTTTCATGAATGTGCTAGATTGCTTAATTTTCTGTGCTCCTACAGCTTGCATACTGTAGATTTTAAGAGTGAACTACCCTTATGCATAGATAATGACTTTTTAAGTGCAGTTGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU180258 lncRNA upstream 25691 3211783 ~ 3212301 (+) True G158766
TU180266 lncRNA upstream 30706 3206998 ~ 3207286 (+) True G158774
TU180260 lncRNA upstream 60028 3172494 ~ 3177964 (+) True CI01000030_03172301_03180142
TU180259 lncRNA upstream 74520 3163243 ~ 3163472 (+) True G158767
TU180251 lncRNA upstream 87982 3149798 ~ 3150010 (+) True CI01000030_03139836_03149991
TU180828 lncRNA downstream 74059 3316961 ~ 3317302 (+) True G159261
TU180985 lncRNA downstream 287895 3530797 ~ 3531025 (+) True G159417
TU180986 lncRNA downstream 288432 3531334 ~ 3531604 (+) True G159418
TU180988 lncRNA downstream 289891 3532793 ~ 3533268 (+) True G159420
TU181002 lncRNA downstream 302491 3545393 ~ 3547030 (+) True G159433
CI01000030_03229393_03232355.mRNA mRNA upstream 5538 3229281 ~ 3232454 (+) True CI01000030_03229393_03232355
CI01000030_03218927_03220573.mRNA mRNA upstream 16987 3218927 ~ 3221005 (+) True CI01000030_03218927_03220573
CI01000030_03202618_03204279.mRNA mRNA upstream 32932 3202573 ~ 3205060 (+) True CI01000030_03202618_03204279
CI01000030_03196185_03200757.mRNA mRNA upstream 37187 3195548 ~ 3200805 (+) True CI01000030_03196185_03200757
CI01000030_03185116_03188245.mRNA mRNA upstream 49680 3185071 ~ 3188312 (+) True CI01000030_03185116_03188245
CI01000030_03253246_03261669.mRNA mRNA downstream 10344 3253246 ~ 3261943 (+) True CI01000030_03253246_03261669
CI01000030_03565934_03569916.mRNA mRNA downstream 322883 3565785 ~ 3570730 (+) True CI01000030_03565934_03569916
CI01000030_03580764_03584676.mRNA mRNA downstream 337862 3580764 ~ 3585255 (+) True CI01000030_03580764_03584676
CI01000030_03594936_03629403.mRNA mRNA downstream 352034 3594936 ~ 3629485 (+) True CI01000030_03594936_03629403
CI01000030_03703231_03704355.mRNA mRNA downstream 459271 3702173 ~ 3704615 (+) False CI01000030_03703231_03704355
TU180187 other upstream 194219 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 623699 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 955622 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 1599765 1636867 ~ 1638227 (+) True G157726
TU178651 other upstream 2231305 1003889 ~ 1006687 (+) True G157332
TU181300 other downstream 1188898 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 1273876 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 3957033 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 4611183 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 4995063 8237965 ~ 8239604 (+) True G162088

Expression Profile