RNA id: TU180792


Basic Information

Item Value
RNA id TU180792
length 442
lncRNA type sense_over
GC content 0.48
exon number 1
gene id CI01000030_03238201_03242662
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3237992 ~ 3242902 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGGCGTGTTTCGAATTATTGCATGGGCGTGGGGAGGATTTTATTTGTCTATCAGGTGGTATTGGGGGTGAACCCTTAAATCTGACAAATTGCTGAAAATTGCAGACATGCACTCAATCCTGTTTGGACGCTCTTGGCACATCTGGTTGTGATCTTGGCACAAAGGCTCCTCTGCAGAAGCCCCCCCAAACTCCACCTTCATCCACAGCTCATTGCCATATACTTTTCCCCCCTACCCTCGAGAAGAAGGAAGATGCTCTCCGTTCTCTCACACTTTTGAGTTGGGGGTTGTGCCTCATCGATGTGTTGTTCGCAGATGTCCCACATTGAACATTCCTCTATGTTCTTCTCAGCTTTGTGAGCAGTGGGTTTTAATTGAGAATTTGGGAGATGAATGCAGCGCTGTGACACCGCTGCACATTTCAAAGGATCTCCGAATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180791 lncRNA upstream 436 3241496 ~ 3241775 (+) True G159234
TU180258 lncRNA upstream 29910 3211783 ~ 3212301 (+) True G158766
TU180266 lncRNA upstream 34925 3206998 ~ 3207286 (+) True G158774
TU180260 lncRNA upstream 64247 3172494 ~ 3177964 (+) True CI01000030_03172301_03180142
TU180259 lncRNA upstream 78739 3163243 ~ 3163472 (+) True G158767
TU180828 lncRNA downstream 74309 3316961 ~ 3317302 (+) True G159261
TU180985 lncRNA downstream 288145 3530797 ~ 3531025 (+) True G159417
TU180986 lncRNA downstream 288682 3531334 ~ 3531604 (+) True G159418
TU180988 lncRNA downstream 290141 3532793 ~ 3533268 (+) True G159420
TU181002 lncRNA downstream 302741 3545393 ~ 3547030 (+) True G159433
CI01000030_03229393_03232355.mRNA mRNA upstream 9757 3229281 ~ 3232454 (+) True CI01000030_03229393_03232355
CI01000030_03218927_03220573.mRNA mRNA upstream 21206 3218927 ~ 3221005 (+) True CI01000030_03218927_03220573
CI01000030_03202618_03204279.mRNA mRNA upstream 37151 3202573 ~ 3205060 (+) True CI01000030_03202618_03204279
CI01000030_03196185_03200757.mRNA mRNA upstream 41406 3195548 ~ 3200805 (+) True CI01000030_03196185_03200757
CI01000030_03185116_03188245.mRNA mRNA upstream 53899 3185071 ~ 3188312 (+) True CI01000030_03185116_03188245
CI01000030_03253246_03261669.mRNA mRNA downstream 10594 3253246 ~ 3261943 (+) True CI01000030_03253246_03261669
CI01000030_03565934_03569916.mRNA mRNA downstream 323133 3565785 ~ 3570730 (+) True CI01000030_03565934_03569916
CI01000030_03580764_03584676.mRNA mRNA downstream 338112 3580764 ~ 3585255 (+) True CI01000030_03580764_03584676
CI01000030_03594936_03629403.mRNA mRNA downstream 352284 3594936 ~ 3629485 (+) True CI01000030_03594936_03629403
CI01000030_03703231_03704355.mRNA mRNA downstream 459521 3702173 ~ 3704615 (+) False CI01000030_03703231_03704355
TU180187 other upstream 198438 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 627918 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 959841 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 1603984 1636867 ~ 1638227 (+) True G157726
TU178651 other upstream 2235524 1003889 ~ 1006687 (+) True G157332
TU181300 other downstream 1189148 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 1274126 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 3957283 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 4611433 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 4995313 8237965 ~ 8239604 (+) True G162088

Expression Profile