RNA id: CI01000030_08906500_08914084.mRNA



Basic Information


Item Value
RNA id CI01000030_08906500_08914084.mRNA
length 1691
RNA type mRNA
GC content 0.42
exon number 6
gene id CI01000030_08906500_08914084
representative True

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8906500 ~ 8914084 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGATGAAATTGAGGCCGTGTTGGTGGTAGAGGGGGATGCTGTTACTCTACACACTGATATTTCTGAAATACAGAATGATGATACGATACTATGGATGTTTGGACCCAAAGACTCTCTCATATCTCAAATACGGAGAAAGGACGACCTGACTACATTTTTTGTCACTGAAGATGTTGGATTCAGAGGTAGATTGCAGGTGAACCAAGAGACTGGATCTCTCACCATCAGAAACACCAGAATCAGACACTCTGGACAATATAAAGTCACCATCTCTAGAAAGAAGATTTCATCCAAGATATTTAATGTTACTGTCTTTGGTGTGGTTAGTGAGACAGATGGAGTGAAGTCAGTGTCATTATCAGTGATTGAGGGAGATCCTGTCACTCTACATGCTGATTCTGAAGTACACCAAGATGCTCTGATGCTGTGGAGGTTTGGAGATAAAGGCATCCTCCTTGCTAAAATCGATATTGAGACCAACGAAACCTCGTTAAATGCTGATGAGAGATTCAGAGACCGACTGAAGCTGGATCAGACTGGATTTCTGACTATCAAGAACACCAAAACCACAGACTCTGGACTCTATGAGCTACAGATTAGAGGCAGTGAGAGCTTATGGCGATTCCTGGTTTCTGTCCGTGCTGTCCCAGATCCAGGTCTTTCTTCAGGTGTTATAGCAGGGATAGTTGCTGGTGTTTTGATTTCTGTTCTGGCTGCAGCTGTTGCTTTGATTTACTATAACCACAGGATCTCTAAATTAAAAAGGCAAATGGGCAAAGAGAAGGAAGAGACAGTGACAGAGGGAGAATCTGTCACTCTACAGACTGATACTACTGAAATACAGGAAAGTATTACGATAAAGTGGTGCTATGAAACTGAAGACAATCTCATTGCTGAAATTAAAAGAGGGACCAGAAACACATGGGAGGGTGCTGATGGGAGATTCTGGAGCAAACTGAGTCTGAATGAAAGAACTGGAGATCTCACTATTAGTAACGTCAGAACCATTCACTCTGGACTCTATAAACTCAAGATCAGCAGCAGCAGCAGAAGAACCAAATACAAGAGATTCATTCTTACCGTCAATGTGAGGACAGTGTCAGTGGAGGAGGGAGGTTCTGTCACTCTCCAGACTAATGCTAAAATACAGAGAGATTATCTGATTCTGTGGACATTTGGAGCTGAAAACCTTTTCATTGTTAAAAAAGATTCAGAAACGACTCGTATTAGTGAGAGATTCAGAGGCAGACTTAGACTGGGCAAGAGGACAGGATCTTTGACCATCACAAACATCACAAAAACAGACTCTGGACATTTTAAACTACAGATCATCAACGGTGAAAAGACCACATTCAGGAGATTCAATGTGACTGTCACCGTGAGGTATGAGCCAGTGATGGAGGGAGGATCTGTCACTCTACACACTGATGATGAAATAAAGAGAGATGATGTGATACTGTGGATGTTTGGAGAAGAAAACTCTCTCATAGCTGAATTCAAAGGAGAGACCGGAGAGACCACTATATATGATGATGTTGCTGATGGGAGATTCAGAGGCAGACTGCAGCTGGACAAGAACACTGGATCACTGACCATCACAAACACCACAACTGAACATGCTGGACATTATAAACTGAAGATCTGCAGCAGTAAAGGAAACACCATCAGGACATTCATTGTTATTGTCAGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU184244 lncRNA upstream 95045 8809324 ~ 8811455 (+) True G162236
TU184240 lncRNA upstream 99323 8806668 ~ 8807177 (+) True G162233
TU184239 lncRNA upstream 100542 8805494 ~ 8805958 (+) True G162232
TU184185 lncRNA upstream 102708 8801247 ~ 8803792 (+) True G162192
TU184237 lncRNA upstream 105935 8800276 ~ 8800565 (+) True G162230
TU184170 lncRNA downstream 7606 8921690 ~ 8927009 (+) False G162186
TU184168 lncRNA downstream 9346 8923430 ~ 8927009 (+) True G162186
TU184266 lncRNA downstream 32038 8946122 ~ 8946337 (+) True G162254
TU184267 lncRNA downstream 32474 8946558 ~ 8947698 (+) True G162255
TU184268 lncRNA downstream 33774 8947858 ~ 8948340 (+) True G162256
CI01000030_08889890_08899808.mRNA mRNA upstream 5820 8889890 ~ 8900680 (+) True CI01000030_08889890_08899808
CI01000030_08875265_08877569.mRNA mRNA upstream 28931 8875265 ~ 8877569 (+) True CI01000030_08875265_08877569
CI01000030_08862264_08875155.mRNA mRNA upstream 31345 8862264 ~ 8875155 (+) True CI01000030_08862264_08875155
CI01000030_08845484_08861801.mRNA mRNA upstream 44699 8845484 ~ 8861801 (+) True CI01000030_08845484_08861801
CI01000030_08837486_08838040.mRNA mRNA upstream 68049 8837221 ~ 8838451 (+) True CI01000030_08837486_08838040
CI01000030_08951137_08953545.mRNA mRNA downstream 35894 8949978 ~ 8953663 (+) True CI01000030_08951137_08953545
CI01000030_08970358_08975052.mRNA mRNA downstream 55308 8969392 ~ 8975093 (+) True CI01000030_08970358_08975052
CI01000030_09065536_09066102.mRNA mRNA downstream 151054 9065138 ~ 9066149 (+) True CI01000030_09065536_09066102
CI01000030_09086896_09146359.mRNA mRNA downstream 172812 9086896 ~ 9146359 (+) True CI01000030_09086896_09146359
CI01000030_09158208_09166948.mRNA mRNA downstream 244124 9158208 ~ 9168173 (+) True CI01000030_09158208_09166948
TU184111 other upstream 334774 8568010 ~ 8571726 (+) True G162137
TU183922 other upstream 358175 8544582 ~ 8548325 (+) True G161986
TU184054 other upstream 666896 8237965 ~ 8239604 (+) True G162088
TU183810 other upstream 1033728 7854085 ~ 7859348 (+) True G161901
TU183621 other upstream 1704015 7199935 ~ 7200017 (+) True G161721
TU184486 other downstream 442319 9356403 ~ 9357014 (+) False G162449
TU184485 other downstream 442475 9356559 ~ 9357014 (+) False G162449
TU184353 other downstream 1128709 10042793 ~ 10042887 (+) True G162323
TU184321 other downstream 1219215 10133299 ~ 10133763 (+) True G162297
TU184320 other downstream 1233180 10221095 ~ 10221224 (+) True G162297

Expression Profile