RNA id: CI01000030_09259092_09261043.mRNA



Basic Information


Item Value
RNA id CI01000030_09259092_09261043.mRNA
length 1552
RNA type mRNA
GC content 0.37
exon number 3
gene id CI01000030_09259092_09261043
representative True

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9258216 ~ 9261043 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAAAAGGCATCATAATGGGTTGTGCAGTCATTGTAATGCAGAACGGACAGTTGAACATGTCATATTATATTGTATGAAAATGAAAGACGAGTGTTGCTCATACAATTGCAGGAAGAAAATCCAAGGCATATCATTTAAAAATCTGTTATAAATACAGGATCAAGTGTTGCAATATATAAAGCAACAAGATTATATTTGAGAATATAATTAAGTAATTAACTTATTATTATTAGTTTATTATTATAATTATTTTGGCTATTATTATTATTTTCTAATTTAGTAAGAGCAGTTGCATTGCTGTTCCACACTCCAGTTCAGTTGGTGGCGGTAATGCACCTAAAAGCTGGTTTGCCAACCGCCAATAAACAAGAAGAAAAAGTCAAGACTCTGTTTTCCGGAAGTGAGGCAATATTTCACGATAAAATAACAGTAAATTAATTTGCTACTTATTAGATTGTGTTTTATTAACGACTACACTTAACCCAACCCTAAACCAATAATGCAAATACAGTAATTAAATGTCCTAATATTAATTTGCGCATGCCCGGTGCGGTATCCCTTCTAGTCTATCCGTTTCCGTTTCCTCCTTCGACTGCTCCCCGTGTTACTTGTTGATGTCACAACTTGCGTCTTTTAGACAAGGCAAAGCGAGAATAACGCAGTCCGTTTTTTTCTGTTTGTTTTTCACACGTTTTGCAGTTTCGGTGCCGATCATCACATTACTAGCAAAAACGACACAACCGTTGTTAATGTTTTTGACGCGGCTTCTTCAAATCAGTATTACAGGTTTACTTTCGATTTCATTAAAAAAAAAAATGGTATCAAAGTAAACATTCGACAGAATCTGGACTTCTGGAGAAGTGGTGAAAATAATGCTAGACATTATTCTCCCACTGTGTGTTTTGCTCCTGCATAGTGTTTCTGGAGCTGATACAGACAGAGTGTCAGTGACTGTGAATGAGGGAGATCCAGTCACTCTAAACACTGGTGTTAAAATAAACCACAGAGACAGAATTAAATGGTTTTTTAATGACTATCGTATAGCTCAAATCATTGGAAATATTAGTATCTGCACAGACATTCAGTGTAAAGATGGTGATGAGAGATTCAGAGACAGACTGAAGCTGGATCATCAGACTGGATCTCTGACCATCACAAACACCAGAAACATAGACTCTGGAGTTTATCAACTACAGATCACCAGCAATACTGACAGCCTTAAGATCTTCAATGTTACTGTCGGAGCTGTAGTGTCAGTGATGGAGGGAGATTCAGTCACTCTACACACTGATATTACAACAAACCAACAAGACAGAATTAAATGGTTTTTTAATGACACTCGCATCGCTCAAATCAATGGAGATCGCAGTAAGATCTGTACAGATGTTCAGTGTAATGAAGGTACTGAGAGATTCAGAGACGGACTGGAGCTGGAGAATCAGACTGGATCTCTGACCATCATGGACATCTCAAACACACACTCTGGACTTTATCATCTAGAGATCACCAACCGCAACAGTGAAAAGATCTTCAATGTATCTGTTCATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU184419 lncRNA upstream 15477 9200234 ~ 9242739 (+) True G162389
TU184468 lncRNA upstream 21653 9235564 ~ 9236563 (+) True G162432
TU184183 lncRNA upstream 107832 9149706 ~ 9150384 (+) True G162190
TU184195 lncRNA upstream 218628 9031877 ~ 9039588 (+) True G162202
TU184269 lncRNA upstream 308523 8949464 ~ 8949693 (+) True G162257
TU184474 lncRNA downstream 20485 9281528 ~ 9281835 (+) True G162438
TU184475 lncRNA downstream 21815 9282858 ~ 9283089 (+) True G162439
TU184477 lncRNA downstream 23341 9284384 ~ 9284611 (+) True G162441
TU184403 lncRNA downstream 64433 9325476 ~ 9325993 (+) True CI01000030_09321409_09339033
TU184348 lncRNA downstream 70403 9331446 ~ 9333904 (+) True G162318
CI01000030_09241979_09249271.mRNA mRNA upstream 8931 9241637 ~ 9249285 (+) True CI01000030_09241979_09249271
CI01000030_09214411_09224921.mRNA mRNA upstream 33275 9214280 ~ 9224941 (+) True CI01000030_09214411_09224921
CI01000030_09181881_09195357.mRNA mRNA upstream 62183 9181881 ~ 9196033 (+) True CI01000030_09181881_09195357
CI01000030_09169745_09175576.mRNA mRNA upstream 81985 9169649 ~ 9176231 (+) True CI01000030_09169745_09175576
CI01000030_09158208_09166948.mRNA mRNA upstream 90043 9158208 ~ 9168173 (+) True CI01000030_09158208_09166948
CI01000030_09300172_09306760.mRNA mRNA downstream 38762 9299805 ~ 9307374 (+) True CI01000030_09300172_09306760
CI01000030_09308467_09315467.mRNA mRNA downstream 46769 9307812 ~ 9316060 (+) True CI01000030_09308467_09315467
CI01000030_09321409_09339033.mRNA mRNA downstream 60297 9321340 ~ 9339964 (+) False CI01000030_09321409_09339033
CI01000030_09361364_09379014.mRNA mRNA downstream 99992 9361035 ~ 9379721 (+) True CI01000030_09361364_09379014
CI01000030_09509234_09514703.mRNA mRNA downstream 247546 9508589 ~ 9516002 (+) True CI01000030_09509234_09514703
TU184111 other upstream 686490 8568010 ~ 8571726 (+) True G162137
TU183922 other upstream 709891 8544582 ~ 8548325 (+) True G161986
TU184054 other upstream 1018612 8237965 ~ 8239604 (+) True G162088
TU183810 other upstream 1385444 7854085 ~ 7859348 (+) True G161901
TU183621 other upstream 2055731 7199935 ~ 7200017 (+) True G161721
TU184486 other downstream 95360 9356403 ~ 9357014 (+) False G162449
TU184485 other downstream 95516 9356559 ~ 9357014 (+) False G162449
TU184353 other downstream 781750 10042793 ~ 10042887 (+) True G162323
TU184321 other downstream 872256 10133299 ~ 10133763 (+) True G162297
TU184320 other downstream 886221 10221095 ~ 10221224 (+) True G162297

Expression Profile