RNA id: TU184403


Basic Information

Item Value
RNA id TU184403
length 518
lncRNA type sense_over
GC content 0.36
exon number 1
gene id CI01000030_09321409_09339033
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9321340 ~ 9339964 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCAAGTGTCAAGGAAGTACAGAAGGTGAGTATTACATACAGCTGATTTAACAAGATGGAGATTGTGTGTAAAGAATATTTGAAAGATGCAAAAATATGTATATTTATTGTGATTAACCAAAGCTGTTTAATTGAGTTTGTATTTTTGTTCAAACAGACAACGGGACGCAGCAAGGTGATCAGGTAAGATACTAAAGCCCCATTCAGATTGTCAGTTCAAATCTGATTTTGTGCATATCCGATTGAAATCCAATCAGATGCAGCAAGTGTGAATGGCAAAAAAAAAAAAAAAATCGCATGAAATGCAACTTTTTACAAATCAGTTTTGAGCTACTTTCAAATGTGGTTTGAAATCCTATTCCAATCACTGTTCTGTAAATCCATTTCAGTCTTAAACTCACAGTTTTGATGCTCAAACACACAGTAATCCCACAAGCTTGCTTCCTCCTGCACATGTCCTGACACGTCAAAAAATGTTGTGCTTCCCTCCATTACATACTTGACTTAACTTCTTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184477 lncRNA upstream 40865 9284384 ~ 9284611 (+) True G162441
TU184475 lncRNA upstream 42387 9282858 ~ 9283089 (+) True G162439
TU184474 lncRNA upstream 43641 9281528 ~ 9281835 (+) True G162438
TU184419 lncRNA upstream 82737 9200234 ~ 9242739 (+) True G162389
TU184468 lncRNA upstream 88913 9235564 ~ 9236563 (+) True G162432
TU184348 lncRNA downstream 5453 9331446 ~ 9333904 (+) True G162318
TU184487 lncRNA downstream 30765 9356758 ~ 9357014 (+) True G162449
TU184491 lncRNA downstream 56285 9382278 ~ 9382506 (+) True G162452
TU184493 lncRNA downstream 63147 9389140 ~ 9389367 (+) True G162454
TU184499 lncRNA downstream 75857 9401850 ~ 9402063 (+) True G162459
CI01000030_09308467_09315467.mRNA mRNA upstream 9416 9307812 ~ 9316060 (+) True CI01000030_09308467_09315467
CI01000030_09300172_09306760.mRNA mRNA upstream 18102 9299805 ~ 9307374 (+) True CI01000030_09300172_09306760
CI01000030_09259092_09261043.mRNA mRNA upstream 64433 9258216 ~ 9261043 (+) True CI01000030_09259092_09261043
CI01000030_09241979_09249271.mRNA mRNA upstream 76191 9241637 ~ 9249285 (+) True CI01000030_09241979_09249271
CI01000030_09214411_09224921.mRNA mRNA upstream 100535 9214280 ~ 9224941 (+) True CI01000030_09214411_09224921
CI01000030_09361364_09379014.mRNA mRNA downstream 35042 9361035 ~ 9379721 (+) True CI01000030_09361364_09379014
CI01000030_09509234_09514703.mRNA mRNA downstream 182596 9508589 ~ 9516002 (+) True CI01000030_09509234_09514703
CI01000030_09526436_09552770.mRNA mRNA downstream 200262 9526255 ~ 9554552 (+) False CI01000030_09526436_09552770
CI01000030_09598376_09634083.mRNA mRNA downstream 272161 9598154 ~ 9634480 (+) True CI01000030_09598376_09634083
CI01000030_09691687_09697272.mRNA mRNA downstream 364803 9690796 ~ 9697492 (+) True CI01000030_09691687_09697272
TU184111 other upstream 753750 8568010 ~ 8571726 (+) True G162137
TU183922 other upstream 777151 8544582 ~ 8548325 (+) True G161986
TU184054 other upstream 1085872 8237965 ~ 8239604 (+) True G162088
TU183810 other upstream 1452704 7854085 ~ 7859348 (+) True G161901
TU183621 other upstream 2122991 7199935 ~ 7200017 (+) True G161721
TU184486 other downstream 30410 9356403 ~ 9357014 (+) False G162449
TU184485 other downstream 30566 9356559 ~ 9357014 (+) False G162449
TU184353 other downstream 716800 10042793 ~ 10042887 (+) True G162323
TU184321 other downstream 807306 10133299 ~ 10133763 (+) True G162297
TU184320 other downstream 821271 10221095 ~ 10221224 (+) True G162297

Expression Profile