Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU184353 |
| length | 95 |
| RNA type | TUCP |
| GC content | 0.41 |
| exon number | 1 |
| gene id | G162323 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 10042793 ~ 10042887 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU184646 | lncRNA | upstream | 4500 | 9975317 ~ 10038293 (+) | True | G162572 |
| TU184649 | lncRNA | upstream | 23670 | 9982711 ~ 10019123 (+) | True | G162574 |
| TU184373 | lncRNA | upstream | 44581 | 9997470 ~ 9998212 (+) | True | G162343 |
| TU184633 | lncRNA | upstream | 77293 | 9941888 ~ 9965500 (+) | True | G162563 |
| TU184428 | lncRNA | upstream | 79541 | 9572428 ~ 9963252 (+) | True | G162398 |
| TU184380 | lncRNA | downstream | 42033 | 10087916 ~ 10095595 (+) | True | G162350 |
| TU184682 | lncRNA | downstream | 60845 | 10106728 ~ 10404016 (+) | True | G162605 |
| TU184364 | lncRNA | downstream | 69807 | 10115690 ~ 10131571 (+) | True | G162334 |
| TU184720 | lncRNA | downstream | 148214 | 10194097 ~ 10195201 (+) | True | G162634 |
| TU184713 | lncRNA | downstream | 182761 | 10228644 ~ 10231531 (+) | False | G162633 |
| CI01000030_09989586_10008913.mRNA | mRNA | upstream | 33638 | 9989367 ~ 10009155 (+) | False | CI01000030_09989586_10008913 |
| CI01000030_09922237_09930221.mRNA | mRNA | upstream | 112425 | 9922049 ~ 9930368 (+) | True | CI01000030_09922237_09930221 |
| CI01000030_09876738_09883981.mRNA | mRNA | upstream | 158788 | 9875285 ~ 9884005 (+) | True | CI01000030_09876738_09883981 |
| CI01000030_09847512_09854804.mRNA | mRNA | upstream | 187117 | 9847422 ~ 9855676 (+) | False | CI01000030_09847512_09854804 |
| CI01000030_09799840_09805801.mRNA | mRNA | upstream | 236974 | 9798003 ~ 9805819 (+) | True | CI01000030_09799840_09805801 |
| CI01000030_10099125_10101681.mRNA | mRNA | downstream | 53075 | 10098958 ~ 10102160 (+) | True | CI01000030_10099125_10101681 |
| CI01000030_10134835_10135293.mRNA | mRNA | downstream | 88952 | 10134835 ~ 10136130 (+) | False | CI01000030_10134835_10135293 |
| CI01000030_10140982_10145096.mRNA | mRNA | downstream | 94000 | 10139883 ~ 10145189 (+) | True | CI01000030_10140982_10145096 |
| CI01000030_10148536_10153337.mRNA | mRNA | downstream | 101334 | 10147217 ~ 10153439 (+) | False | CI01000030_10148536_10153337 |
| CI01000030_10164557_10167430.mRNA | mRNA | downstream | 118481 | 10164364 ~ 10169382 (+) | True | CI01000030_10164557_10167430 |
| TU184486 | other | upstream | 685779 | 9356403 ~ 9357014 (+) | False | G162449 |
| TU184485 | other | upstream | 685779 | 9356559 ~ 9357014 (+) | False | G162449 |
| TU184111 | other | upstream | 1471067 | 8568010 ~ 8571726 (+) | True | G162137 |
| TU183922 | other | upstream | 1494468 | 8544582 ~ 8548325 (+) | True | G161986 |
| TU184054 | other | upstream | 1803189 | 8237965 ~ 8239604 (+) | True | G162088 |
| TU184321 | other | downstream | 87416 | 10133299 ~ 10133763 (+) | True | G162297 |
| TU184320 | other | downstream | 101381 | 10221095 ~ 10221224 (+) | True | G162297 |
| TU184331 | other | downstream | 445563 | 10491446 ~ 10491607 (+) | True | G162303 |
| TU184890 | other | downstream | 692698 | 10738581 ~ 10740551 (+) | True | CI01000030_10738658_10751094 |
| TU184924 | other | downstream | 820129 | 10866012 ~ 10868440 (+) | True | G162821 |
