RNA id: CI01000030_10140982_10145096.mRNA



Basic Information


Item Value
RNA id CI01000030_10140982_10145096.mRNA
length 1885
RNA type mRNA
GC content 0.35
exon number 5
gene id CI01000030_10140982_10145096
representative True

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10139883 ~ 10145189 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTTTAAAAACAAAAAATTACTGGCAGAAAAAAAAACATAGATAAACTGTAACAATACAGTAATTTCTTATCTTATTAATTACTATTCCTATAAATCTTCTTATAAGCCTATAAAATCTGTTACATTTGGCATACATTAATTGTTAGAAAACAGCCATAAACCTCTAAAACACGCTGTAAAAAAAAAAAAAAAAAAAAGAAAGAAAAAAAGGCAGGTTGCCAGAAATTTACCGTACAAAATATGGTAACAACATTTTAAGTTTTACAGATCTAACCTAATTTCACTGTAAAAACCATATTTCATTAACTGATGTAATGTCAATTTATCAACCTAATGAAGTACTAACATCTGTTTTGATTTTTAATGTACTGAAAACCACCAACAAACAACAGTGATGAGAAAATCACATGATAAATCAAAGCTCATCACAAGTTTTCCACAAGCTGAGAAGCTGTAAACTACTAGAATGTGCACAGTGTCATTCACACAAACACTAAACACCATCATGGTAACACACATGAAAAATAAACTAGTGTTTATACAGTGTTAAAACTGTCTTATTTCATTTGAGTCCACTGAAAATGATTATTTCTTAACATAAAACTGTAAACACTTCATGTGTAATAGTGAAATAATCAAAACATAACTTTTGTCTATGGGATGACAATAATATTCCAGCTATGAAAGACTTTTAAACTTGTTCACCAAAAAAAAAAAAAAAAACTTTGAATCTCAACAATGCTGACAATCAACAAAATAGATAAACAGATTAGCTCTGAACATCACAAAAAAAGCTACAAAAAGTCATAAAAACGAAAGCAAATAGTAAAAAAAAAAAATGAAGAGAAGATAATAGGACAACACAGCGGTATAATTTATTCCTCTTGAAATGCATGCTAGGAGTCATAAATGAGTCTTGAGCTGTTTCTCAATATACGTTCTTTAGCAATCTTGCATCCTTGTGTTCTCGCTCTACTTCATCATCAAACGTCGGAGTTCAATTCCAATACTCAGGGAGCCATCATCAGGGAGACTGAAACTTGGCTCACCACAGTTGAAAAGTCTGGTCAGGCCAGATTTAAGGTCTGGACATACCAACATGGCTTCTTGTCTTGAGTTCTCTGGCCTCTGCTGGTGTATGAGCTTGAGCAGTGCAGCACTCTATGGAAAGGGAAACATTCTCCAGCTTCTGCTCAGCAGCCTCAATGAGGAGTTCAAGGTCTCTTGCGCCAGAGAGGCACTACTCTGTCGGGAATCTGAGGAATCGAGAGTGGCATCAGCAGGGATCAGGGAGTGGACAGTGTGCATTTGCTTGGACTTTGTGAAGTCTACAGACAAAAGAAGACTGAGCTTGAACAGTGAGGTCATGAAGATCCATCAGTCTACCGTGATTCTGCTGCTGGTTATATGTGCGTCATTGTCCACTTACAGTCAAACTTATGAGGCTTTCAAAAGAAAACATGTTGCTCCAAGAGGCATGCGTGCAAAGTATTGCACTGCTGTGATCGAAAATAGACAAATCAACAGATACAGAGACTGCAAACCAATAAACACCTTCATTAAAGCAACTGAAGCGGAAATTAAAGAAGTTTGTATATCAGGAAAAGGGGATGGAAAGACCTATAAAAGCAATACTTTATTTTATGTGATTGATTGTACTTTTGACAAAAAAGAGTGGAACAGTTGTAAATATAAGGATGATGTTGAAGTACAAAAATCACAAATTACTTTGACATGTGAAGGAGGTGTCCCAGTGCATTATGGTCCTGCAAAGACAGCCGGCTGGATGTAGCATCACATACCTTCAATTTATTTCACTATTGTTTCACTTTGTTTTTGAATATACAAAAACAGACAAGGGAAAAAAGATGAAGACAGAAGAAGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU184364 lncRNA upstream 8312 10115690 ~ 10131571 (+) True G162334
TU184380 lncRNA upstream 44288 10087916 ~ 10095595 (+) True G162350
TU184659 lncRNA upstream 58423 10017898 ~ 10081460 (+) True G162583
TU184649 lncRNA upstream 120760 9982711 ~ 10019123 (+) True G162574
TU184720 lncRNA downstream 48908 10194097 ~ 10195201 (+) True G162634
TU184713 lncRNA downstream 83455 10228644 ~ 10231531 (+) False G162633
TU184711 lncRNA downstream 90828 10236017 ~ 10238283 (+) True G162633
TU184710 lncRNA downstream 91937 10237126 ~ 10237654 (+) True G162632
TU184737 lncRNA downstream 139474 10284663 ~ 10299194 (+) True G162650
CI01000030_10134835_10135293.mRNA mRNA upstream 3753 10134835 ~ 10136130 (+) False CI01000030_10134835_10135293
CI01000030_10099125_10101681.mRNA mRNA upstream 37723 10098958 ~ 10102160 (+) True CI01000030_10099125_10101681
CI01000030_10039688_10047019.mRNA mRNA upstream 92673 10039358 ~ 10047210 (+) False CI01000030_10039688_10047019
CI01000030_09989586_10008913.mRNA mRNA upstream 130728 9989367 ~ 10009155 (+) False CI01000030_09989586_10008913
CI01000030_09922237_09930221.mRNA mRNA upstream 209515 9922049 ~ 9930368 (+) True CI01000030_09922237_09930221
CI01000030_10148536_10153337.mRNA mRNA downstream 2028 10147217 ~ 10153439 (+) False CI01000030_10148536_10153337
CI01000030_10164557_10167430.mRNA mRNA downstream 19175 10164364 ~ 10169382 (+) True CI01000030_10164557_10167430
CI01000030_10178017_10185588.mRNA mRNA downstream 30287 10175476 ~ 10188119 (+) True CI01000030_10178017_10185588
CI01000030_10199403_10226165.mRNA mRNA downstream 53922 10199111 ~ 10226880 (+) True CI01000030_10199403_10226165
CI01000030_10246173_10256836.mRNA mRNA downstream 99221 10244410 ~ 10256912 (+) True CI01000030_10246173_10256836
TU184321 other upstream 4324 10133299 ~ 10133763 (+) True G162297
TU184353 other upstream 94000 10042793 ~ 10042887 (+) True G162323
TU184486 other upstream 782869 9356403 ~ 9357014 (+) False G162449
TU184485 other upstream 782869 9356559 ~ 9357014 (+) False G162449
TU184111 other upstream 1568157 8568010 ~ 8571726 (+) True G162137
TU184320 other downstream 2075 10221095 ~ 10221224 (+) True G162297
TU184331 other downstream 346257 10491446 ~ 10491607 (+) True G162303
TU184890 other downstream 593392 10738581 ~ 10740551 (+) True CI01000030_10738658_10751094
TU184924 other downstream 720823 10866012 ~ 10868440 (+) True G162821
TU184823 other downstream 1195566 11340755 ~ 11340925 (+) True G162730

Expression Profile