RNA id: CI01000030_10911224_10918511.mRNA



Basic Information


Item Value
RNA id CI01000030_10911224_10918511.mRNA
length 4632
RNA type mRNA
GC content 0.34
exon number 6
gene id CI01000030_10911224_10918511
representative False

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10908366 ~ 10918929 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATAAAAAAGATACACGACGCCAGAGTTGCACTTGTCTTAGACTTCACAAGTAAAATGCATAGTCAACAAAACCTTTTTGCCAAATGAATCACAGAAACGTATGCACTTAATTTGTTCTTATGCATTTTTAAAAATAGCATTTTGGTTCTTGGTAATATGTGAATGTGGATTATGGTCTTTTTTTTTTTTTTTTTGAATAAGCCCTTTTTAACTTCTCTCTGAGGTAGAGTTGAAAATGTTCTCTAGGCTTATAATCAAAAATAGGAGAACTACATTGGTTTGTTGCAAATTTACAGATAATGCAATTGAGATGTTTACATTTGCTTGTTGGGGTAATATTGCTTGTCAACTGACAACAAAGTTCCCCATTTGTATCAGCATATAATTGCACATGTTTTATAGTTAATGAAATATTTAAAAACAAGATGCATTAATTATACATTAATTTCCCTTAATAAAAAAGTAAATTGAATAAGACGGTGTTAAAGGTGCGAGTGTGGATTAGTAATCTGGCCCCTTGGTATGAAGGAGAAACAATGTTGCCCCTCGTCACTATCGAAGTTGCCCATCCCTGATGTAGAGGATTCTTGGCCTTCACGTCACTTTCACCTTAAAGAAAAAAAAGAAATAGTGCAATAGTTGATGTTATATCTGCTATGTTTATGTTCACATGTTTATTACCCAGAACAAGTGCACGTCTATATGTAACCTGTTCACCACAGTGGCTTGCACACACACAAACAGATGACTATGTCCACTATGTAGAAAGGGTTGAAAAAAGAGACTAAAAATATTCAACATTTTAGTGCACCAGTGTCCTGCTGGAGAGGAGAAACATTCACAGACTGTGATGATGCACTTCCACAGTTTTTAACATCTATCAAAGTTTATGTATTTTTATGTTGTTTTTTTTGTTGTTTTTTTGGAAGTGACTCTAAATTTGACATATTTCTCTCTTCTGACTGCCTTAATCAATCTATTTTTGAAAGTCGTGTAAACACTGGAATCCTGGAAGTGTGAAAAGAGTTCATATGGGGAAACAAACTCATTACATAAATGTATGTTATTCAGTACATTTACATAAAACAAATAGTAATCGGCCTACCCTTATGGAACAAAAATATATGGGAAATTTTCTGCAAAATATAATGTGATATATTACATAATACATTTCCATATATGGGAAACTAGTGCTTATATTTTTCAATATACTGCAATGTATGCATTGACCATTTATGGTTATATATTACATTTAAAATATTTAGAAATGAAGACAAAAATAGCATTACATGTAATATTCATAAAGTTTTATCCTTTATTGTGTACATATATTGCACATACATATTCCCATATAAATGTGAATGTATGCACACACATATACACACACATTCACAGAATGAGTTACAGCAGATTTTTAGTTCCCAGCATGCTTTGCTTCTGACTGTTAAAGGAGAATAAATGTTAAAATTAGGTGCTATTTCATATGTTTTTCTCAATATAGGGGGAGCTTTTCAATATATGAAAAGCAGCAATTCCTTATGTATTATTCAATATATTGTAATATATTAACACAATATGTTATTCTGTATATTTTCAAATATACTGTTAAATCATTTAATATATTGATTCATTCATAGGAAAATATATTTTCTTTGCATAAGGGTATGTTTTAGATGTATATGTAGTTTATGCAAGAAAATCTTCAAGACGTACAAAAATAATAATTTAATTATAATTGTAATGATGGGTCGGCAGAGCGGGGATCCATTTGCAAGCTTTATTAAGAACAGTATTTACACAGGTAGACAGGGGCAAAGGCAGGAACATAAACAAGGACAGGCAATGGTCGAGGCAGGCGGCAGACAAACAGTATCGGGTCACAGGCAGAGATCAGGGCAGGCGGCAAACAAACACAGTCCAGTACACAGGCAAGGTTCAGGGCAGGCAGCAGAGAATCACAAAGAATAAACAATCCAAACGGAAACCAGGAAACAGTCCACAAGAAAACGCTTAGTAATGATCACCACGGCAAATCAAGACTTCGCAAAGGGGGTGTGTGTGTGTGTGTGTGTGTGTGTCTTAAATAGTCCAGGTAATGATCTGCAGGTGTGTGTGGCAATTGGTGATTGGTGCATGTGATTGGAAGGGAGGATTATGGGAAGTGGAGTCCAGGAACTGACAGGAACAGACAGTGATCGTGACAATAATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATATATATATATATATATAGTGGCCTCCACAAGTATTGAGACAGTAAAGACAAAATTGCTCTGTTAGCTGTGGTGTCAAGACATCTACAAATATGATTAAATGATTAATGAGGCAGAAGTACAGAATGTCACATTTTATTATTGGCTGTTTCAACACTAAATGTTTTACCAACTAATAAGTACAGCACTTTTGGACAGTGGTGTGATGTAACGAAATAATAATACTTCGTTACAGTACTTGAATATTTTTTGGGAGAATCTGTGCTTTACTTGAGTTTTTATATTTCTGTCAACTTTTACTTTTACTCCACTACATTTCCTAAATAAAATGTATACTTTTACTCTGATACATTTTCCCAAAGTATTTTCGTTACTTACTACAAAATAAAGTCGGAGGAACACAGACTGGTGGGAATTTAATCCCATAGGATCCCATGGGTTTATATATCTGTCAAAATGTCACGCCAAGATTCGAACCGCTTCCTGAACCAGTCAGGTGGAAGCGAGGCTTCAGACCTCATCAATGACGTCATTGGTCTAAAGCGATACAAGCCTCGATTCCTAACTTCACTGAAAACTTCCGGGATTTCTTGGCACGCTCCAAAGCCTCGGCACAGAAACTCGTCTGTCATTTTATTACTGAACCAGTTTGAAGAGTTTGTCTTTTCATATTTGTGGACTGAAACCGTTGAAGATGTTTCACCCTGTTTTGTTCTGTTTGTGTTTGTGGCGTCTGGTGGGTTTTTTATTGATGAAGTGACTGTGAATAAAGGAGATTCAGTCACACTCAAAATGTATTTTTTTGAAATTCTGGATGATGATGTGTATCAGTGGTTTGGACCTGAACACACTTTAATAGCTGAAATCAATAAACAGTTTGACAGCTTCACTGTATATGATGGTGTTCTTGATGGGAGATTCAGAGACAGACTGAAGCTGAACAATCAAACTGGATCTCTGACCATCACAAACACCAGACCTGAACATACTGGACCTTATCAACTAAAGATCAACAGTACTGTGATCAAGAATTTCTTTCTCTGGGTCATTGTTAAAGTGTCAGTGAAGGAGGGAGATTCAGTCACTCTGAACTCTGATCTTACTGAAATGAAGGATGATGATGAGATTCAGTGGAGGTTTAAAAACACTTTAATTGCTGAAATCAATAAACGGGCCGACAGCTTCACTGTATATGATGATGTTCTTGATGGGAGATTCAGAGACACACTGAAGCTGGACAATCAAACTGGATCTCTGACCATCACAAACACCACAACTGAACATGCTGGAGATTATGAACTGAAGATCAACAGTGTGAGGATTGAATGCATTCTCACTGTCTTTGGTGAACTTAAGTCAGTGTCAGTGATGGAGGGAGATTCAATCACTCTAAACTCTGATCTTACTGAAATACATGACAGTGATCTGATTCTGTGGTGGTTTGAAAACATTTTAATAGCTGTAATCAATAATCAGGTCAACAGCTTCACTGTATATGATGATGTTCTTGATGGGAGATTCAGAGACAGACTGAAGCTGGACAATCAAACTGGATCTCTGACCATCACAAACATCACAACTGAACATGCTGGAGTTTATGAGCAACAGATGTCTTCAAGAGAATTCTTTCTCGTAAAAGCATTCAGTGTTTCTGTCTATGACTCTGTCCACTGTTGTGGTCCTACTGAAGCTGTGATCCGATTGGTCCTCTCTGCTCTGGTGGGCGTGGCTACTGTCATTCTTCTGGTTTATGACATCAGATCCAGAAGAGCTGAACAAGATCAAGCACAGATTCACACATCAGGAAACTAAATGATGTAATTTCTCATAACTATTTCAATCATTTATTAATCTTCTTTTATTTTAATGGTTTTATATTCATCTGTTGGTATCGGTGTTTATTTATCGGCGGCTCATTTCCACCCTAGAAAATCATTTGAAAACAAAAAGCAACAAATTCTCACTTTAATGCTCAAAGTATCAAATGTGACAGTTTATCATGACAAATATACTGAACATTACAAAAGATCGCTTTGCTCACACTAGATTAGTTAGTATAACATACTTTCCCTTTTTAACTTGTTTTTTAACCTTTTTTTTTTTTACAGTCTAATTTTTTATATTTGATTGGGGGCTTTAAACACTTAAAGGATCTTGTGTGTCTTTCATTGTGATTATTGTTCAGTCAGAGCTGGTTAATGGTGTTCAGATCAGACGTCTCTAATAATAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU184938 lncRNA upstream 9918 10896840 ~ 10898448 (+) False G162830
TU184939 lncRNA upstream 9918 10896840 ~ 10898448 (+) True G162830
TU184933 lncRNA upstream 25785 10882356 ~ 10882581 (+) True G162827
TU184927 lncRNA upstream 37186 10870534 ~ 10871180 (+) True G162822
TU184922 lncRNA upstream 51274 10856858 ~ 10857092 (+) True G162819
TU184965 lncRNA downstream 55832 10974761 ~ 10975108 (+) True G162855
TU184969 lncRNA downstream 62569 10981498 ~ 10982379 (+) True G162859
TU184863 lncRNA downstream 134344 11053273 ~ 11091871 (+) True G162762
TU184988 lncRNA downstream 184408 11103337 ~ 11103651 (+) True G162875
TU185013 lncRNA downstream 297058 11215987 ~ 11234587 (+) True G162892
CI01000030_10860938_10862107.mRNA mRNA upstream 46074 10860768 ~ 10862292 (+) True CI01000030_10860938_10862107
CI01000030_10775818_10796010.mRNA mRNA upstream 111713 10773601 ~ 10796653 (+) True CI01000030_10775818_10796010
CI01000030_10766284_10769462.mRNA mRNA upstream 138882 10766284 ~ 10769484 (+) True CI01000030_10766284_10769462
CI01000030_10753303_10762765.mRNA mRNA upstream 145601 10753303 ~ 10762765 (+) True CI01000030_10753303_10762765
CI01000030_10738658_10751094.mRNA mRNA upstream 156818 10738087 ~ 10751548 (+) False CI01000030_10738658_10751094
CI01000030_10936461_10939911.mRNA mRNA downstream 17532 10936461 ~ 10940790 (+) True CI01000030_10936461_10939911
CI01000030_10958494_10960930.mRNA mRNA downstream 38228 10957157 ~ 10962204 (+) True CI01000030_10958494_10960930
CI01000030_10968005_10969830.mRNA mRNA downstream 48177 10967106 ~ 10970051 (+) True CI01000030_10968005_10969830
CI01000030_10993343_11015527.mRNA mRNA downstream 74414 10993343 ~ 11015855 (+) True CI01000030_10993343_11015527
CI01000030_11017331_11024754.mRNA mRNA downstream 98402 11017331 ~ 11025102 (+) True CI01000030_11017331_11024754
TU184924 other upstream 39926 10866012 ~ 10868440 (+) True G162821
TU184890 other upstream 167815 10738581 ~ 10740551 (+) True CI01000030_10738658_10751094
TU184331 other upstream 406723 10491446 ~ 10491607 (+) True G162303
TU184320 other upstream 687142 10221095 ~ 10221224 (+) True G162297
TU184321 other upstream 772807 10133299 ~ 10133763 (+) True G162297
TU184823 other downstream 421826 11340755 ~ 11340925 (+) True G162730
TU185083 other downstream 573672 11492601 ~ 11496119 (+) True G162951

Expression Profile