RNA id: TU178402


Basic Information

Item Value
RNA id TU178402
length 1111
lncRNA type antisense_over
GC content 0.33
exon number 2
gene id G157125
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 180944 ~ 182355 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAATAATGAAATTGTTGGTTAGCACTTTTTAAAACTTAAAACATATATGAATTTGTCAAGTGTGTGGAAAAACTCTCTTCATCTAGTTCACCGCTTCTATGACATTTACAGTTATTTATTTGTTTATTTCAAGTCTTTATATGTTTTCTGTGGTTAAGGATTAGTGCAAGGTCGAACAATAATGAAAAAACAAAATAATCAAATTAATGTTGAAATAATGCATGTCCTTTTTTTGGTAATACGATAAAACCCTTTTTTTTTTTTGACAAAAAAAAAGGTTGTGAAAAAGTACTGAAAGTAATACATTTAAATAGATATTTGCATGTTCTTCACATCATGTTATATGCAAACCTGCATTGAGCACGTTTCACTTTCATTTTTATTTCAAGTGAGTCTCTTTAATCTCATGGTATGGAAACACTGCCAGATATGTCACTTTCTTTTTTTCTCCATTCAAACATCCGTTTCCGCTTCACAGATACAGACTGTTCTGAGCAAATAATTTCACAATAAGATTAAAGAGAGACTTACTATAAAAAAAATGCACACATGCAAAATATTTACCTTTGTTTATCTGAAGGTGAAAATATAAATATACAAATATACAATTACTCTTTCGAAGTGAACATAAATGGAACGTTTGAACCCAAGTTCAACTATTAATTTTTCTGCAGCTTCTGAAGGATCTGTATTTTTTTTAGACAATTTTTTTTAAGACAAAAGTAGTTTAAAGCTTTTAAAGTAATCTGAGGGCATATAGTTTTGGTTAAGGAAGAGAGTAACAATTTAATCTGTCAATTTACGGGAAAAGCAGAACTGGAGCCGCATTTGTGACCGATCGTTTCGCTAGATAAGACCCTTATTTCTCGTCTGGTATGGTTTAAAGCCATTTGAAGCTGCACTGAAACTGTAATTTTGACCTTCAACTGTTCGAGGCCAATTGAAGTCCACTATAAGGAGAATAATCCTGGAATGTTTTCATCAAAAATCTTAATTTCTTTTTGAATGAAGAAAGAAGGACATGGACAACTTGGATGACATGGGGCAGAACTCCTTGACTCTTGCTGTCCCGTTGTACCAGAACTCCCTGGCACTTGCTGTTCCAGTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178417 lncRNA upstream 2555 178185 ~ 178389 (+) True G157140
TU178415 lncRNA upstream 4607 176092 ~ 176337 (+) True G157138
TU178410 lncRNA upstream 16734 163929 ~ 164210 (+) True G157133
TU178407 lncRNA upstream 21305 159321 ~ 159639 (+) True G157130
TU178406 lncRNA upstream 22756 157912 ~ 158188 (+) True G157129
TU178422 lncRNA downstream 11010 193365 ~ 193668 (+) True G157145
TU178432 lncRNA downstream 15188 197543 ~ 197976 (+) True G157149
TU178485 lncRNA downstream 76152 258507 ~ 263669 (+) True G157192
TU178494 lncRNA downstream 91602 273957 ~ 277116 (+) True G157201
TU178543 lncRNA downstream 190004 372359 ~ 392298 (+) True G157243
CI01000030_00023913_00029855.mRNA mRNA upstream 150409 23913 ~ 30535 (+) True CI01000030_00023913_00029855
CI01000030_00476829_00484029.mRNA mRNA downstream 294474 476829 ~ 484029 (+) True CI01000030_00476829_00484029
CI01000030_00753779_00759287.mRNA mRNA downstream 571376 753731 ~ 759320 (+) True CI01000030_00753779_00759287
CI01000030_00760361_00762546.mRNA mRNA downstream 578006 760361 ~ 762817 (+) True CI01000030_00760361_00762546
CI01000030_00811105_00836626.mRNA mRNA downstream 628750 811105 ~ 836748 (+) True CI01000030_00811105_00836626
CI01000030_00857611_00858359.mRNA mRNA downstream 675115 857470 ~ 858858 (+) True CI01000030_00857611_00858359
TU178385 other upstream 34091 116156 ~ 146853 (+) True G157108
TU178343 other upstream 163188 12878 ~ 17756 (+) False G157076
TU178522 other downstream 145294 327649 ~ 356483 (+) True G157227
TU178650 other downstream 820922 1003889 ~ 1006687 (+) False G157332
TU178651 other downstream 820922 1003889 ~ 1006687 (+) True G157332
TU179078 other downstream 1454512 1636867 ~ 1638227 (+) True G157726
TU179965 other downstream 2096758 2279113 ~ 2279192 (+) True G158493

Expression Profile