RNA id: TU178770


Basic Information

Item Value
RNA id TU178770
length 295
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G157443
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 936561 ~ 936855 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACAATGACACAGCCGTGTTTTAGTTTAGGAGGAGGCATTCTGTGTGAATATAGTGTACAATGTTTCGATTTAAAGTAACATTTTAATTTGGTGCAAAGCGCTGATCAAACAATTATTTAGACTGTGGGTGATTTTATCAGCTGGTTGTGATAACCTTGGGTAGACTGTAATGATCAAAAAGGAATTATTTACAGGGTTGCCAGGTTTTCACAACAAAATCCGCCCAGTTGCTATTCAAAACTACCCCAAAACTAGACCAATCACGTTTCATGGGGGGTCCCACAGTAAAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178765 lncRNA upstream 3449 932683 ~ 933112 (+) True G157438
TU178662 lncRNA upstream 11559 909005 ~ 925002 (+) True G157338
TU178657 lncRNA upstream 15006 918129 ~ 921555 (+) True G157336
TU178757 lncRNA upstream 39145 896867 ~ 897416 (+) True G157431
TU178673 lncRNA upstream 47526 887808 ~ 889035 (+) True G157349
TU178783 lncRNA downstream 43534 980389 ~ 980764 (+) True G157452
TU178660 lncRNA downstream 44646 981501 ~ 984600 (+) True G157337
TU178785 lncRNA downstream 75577 1012432 ~ 1012687 (+) True G157454
TU178787 lncRNA downstream 77718 1014573 ~ 1014902 (+) True G157456
TU178804 lncRNA downstream 92397 1029252 ~ 1029810 (+) True G157471
CI01000030_00873074_00886771.mRNA mRNA upstream 49754 871944 ~ 886807 (+) True CI01000030_00873074_00886771
CI01000030_00857611_00858359.mRNA mRNA upstream 77703 857470 ~ 858858 (+) True CI01000030_00857611_00858359
CI01000030_00811105_00836626.mRNA mRNA upstream 99813 811105 ~ 836748 (+) True CI01000030_00811105_00836626
CI01000030_00760361_00762546.mRNA mRNA upstream 173744 760361 ~ 762817 (+) True CI01000030_00760361_00762546
CI01000030_00753779_00759287.mRNA mRNA upstream 177241 753731 ~ 759320 (+) True CI01000030_00753779_00759287
CI01000030_00937645_00942188.mRNA mRNA downstream 790 937645 ~ 942822 (+) True CI01000030_00937645_00942188
CI01000030_00945680_00950479.mRNA mRNA downstream 8825 945680 ~ 950916 (+) True CI01000030_00945680_00950479
CI01000030_01003310_01003776.mRNA mRNA downstream 66259 1003114 ~ 1003795 (+) False CI01000030_01003310_01003776
CI01000030_01091944_01093682.mRNA mRNA downstream 154844 1091699 ~ 1094481 (+) True CI01000030_01091944_01093682
CI01000030_01134054_01144773.mRNA mRNA downstream 197199 1134054 ~ 1145322 (+) True CI01000030_01134054_01144773
TU178522 other upstream 580078 327649 ~ 356483 (+) True G157227
TU178385 other upstream 789708 116156 ~ 146853 (+) True G157108
TU178343 other upstream 918805 12878 ~ 17756 (+) False G157076
TU178650 other downstream 66422 1003889 ~ 1006687 (+) False G157332
TU178651 other downstream 66422 1003889 ~ 1006687 (+) True G157332
TU179078 other downstream 700012 1636867 ~ 1638227 (+) True G157726
TU179965 other downstream 1342258 2279113 ~ 2279192 (+) True G158493
TU179886 other downstream 1659021 2595876 ~ 2614293 (+) True G158416

Expression Profile