RNA id: TU178785


Basic Information

Item Value
RNA id TU178785
length 256
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G157454
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 1012432 ~ 1012687 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTAATCATGAGCGCACTGCCTGCACGGGCCACATGGGCTAAACACAGAGCTGCAACCCACAGACATAATGAAAGTGCTGGAACTGAGATACGAGCCTCAATGAAAAACAGAAGGGCTTCAGAGCAGGATCCACATCTGAGTCAGGGTGCCGCAGTCTGATTTTAGGATAGTTTAAACAATATACTGCACCCAGAGTGCTCCGTATGCAAAGCCATATTGATGCATTCTCAACTGGTGAAAGTTGTATACCAGAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178660 lncRNA upstream 27832 981501 ~ 984600 (+) True G157337
TU178783 lncRNA upstream 31668 980389 ~ 980764 (+) True G157452
TU178770 lncRNA upstream 75577 936561 ~ 936855 (+) True G157443
TU178765 lncRNA upstream 79320 932683 ~ 933112 (+) True G157438
TU178662 lncRNA upstream 87430 909005 ~ 925002 (+) True G157338
TU178787 lncRNA downstream 1886 1014573 ~ 1014902 (+) True G157456
TU178804 lncRNA downstream 16565 1029252 ~ 1029810 (+) True G157471
TU178817 lncRNA downstream 37649 1050336 ~ 1050690 (+) True G157484
TU178835 lncRNA downstream 54475 1067162 ~ 1067470 (+) True G157501
TU178845 lncRNA downstream 65760 1078447 ~ 1078676 (+) True G157511
CI01000030_01003310_01003776.mRNA mRNA upstream 8637 1003114 ~ 1003795 (+) False CI01000030_01003310_01003776
CI01000030_00945680_00950479.mRNA mRNA upstream 61516 945680 ~ 950916 (+) True CI01000030_00945680_00950479
CI01000030_00937645_00942188.mRNA mRNA upstream 69610 937645 ~ 942822 (+) True CI01000030_00937645_00942188
CI01000030_00873074_00886771.mRNA mRNA upstream 125625 871944 ~ 886807 (+) True CI01000030_00873074_00886771
CI01000030_00857611_00858359.mRNA mRNA upstream 153574 857470 ~ 858858 (+) True CI01000030_00857611_00858359
CI01000030_01091944_01093682.mRNA mRNA downstream 79012 1091699 ~ 1094481 (+) True CI01000030_01091944_01093682
CI01000030_01134054_01144773.mRNA mRNA downstream 121367 1134054 ~ 1145322 (+) True CI01000030_01134054_01144773
CI01000030_01151171_01165675.mRNA mRNA downstream 138243 1150930 ~ 1165939 (+) True CI01000030_01151171_01165675
CI01000030_01172285_01175092.mRNA mRNA downstream 159508 1172195 ~ 1175095 (+) True CI01000030_01172285_01175092
CI01000030_01218528_01228673.mRNA mRNA downstream 204844 1217531 ~ 1228693 (+) True CI01000030_01218528_01228673
TU178650 other upstream 5745 1003889 ~ 1006687 (+) False G157332
TU178651 other upstream 5745 1003889 ~ 1006687 (+) True G157332
TU178522 other upstream 655949 327649 ~ 356483 (+) True G157227
TU178385 other upstream 865579 116156 ~ 146853 (+) True G157108
TU178343 other upstream 994676 12878 ~ 17756 (+) False G157076
TU179078 other downstream 624180 1636867 ~ 1638227 (+) True G157726
TU179965 other downstream 1266426 2279113 ~ 2279192 (+) True G158493
TU179886 other downstream 1583189 2595876 ~ 2614293 (+) True G158416
TU180187 other downstream 2000769 3013456 ~ 3013518 (+) True G158703
TU181300 other downstream 3419113 4431800 ~ 4488526 (+) True G159685

Expression Profile