RNA id: TU178817


Basic Information

Item Value
RNA id TU178817
length 355
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G157484
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 1050336 ~ 1050690 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGATTGGTCATTTTCTAAAAAAAATACAAATTTATACACTTTTAACCACAAATGCTTGTCTTGCACTGCTCTGAAATACACCATGCATTACGTTGAAAGGTCACGCATGACATAGGCGGAAGTAGGGTGAAAACCTTCATCTAATTTTCTCCTTCAACTTCAAAATCATCCGATATCGTTGTTTTACCTATTTTTTTGTAAAGGCCCTTTGGCTTAGTCTTTGCACGTTCGCTTTGTAGACACTGGATCGGTACTTCCACCTACATCATGCATGACCTTTGTAACGTGATTACGTCATGTGTGCGGATCGCAGAGCAGTGGTTAAAAAGTATATAATTTTTTTTTTTTTTTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178804 lncRNA upstream 20526 1029252 ~ 1029810 (+) True G157471
TU178787 lncRNA upstream 35434 1014573 ~ 1014902 (+) True G157456
TU178785 lncRNA upstream 37649 1012432 ~ 1012687 (+) True G157454
TU178660 lncRNA upstream 65736 981501 ~ 984600 (+) True G157337
TU178783 lncRNA upstream 69572 980389 ~ 980764 (+) True G157452
TU178835 lncRNA downstream 16472 1067162 ~ 1067470 (+) True G157501
TU178845 lncRNA downstream 27757 1078447 ~ 1078676 (+) True G157511
TU178873 lncRNA downstream 45660 1096350 ~ 1096570 (+) True G157535
TU178874 lncRNA downstream 46043 1096733 ~ 1097008 (+) True G157536
TU178863 lncRNA downstream 47227 1097917 ~ 1099182 (+) True G157525
CI01000030_01003310_01003776.mRNA mRNA upstream 46541 1003114 ~ 1003795 (+) False CI01000030_01003310_01003776
CI01000030_00945680_00950479.mRNA mRNA upstream 99420 945680 ~ 950916 (+) True CI01000030_00945680_00950479
CI01000030_00937645_00942188.mRNA mRNA upstream 107514 937645 ~ 942822 (+) True CI01000030_00937645_00942188
CI01000030_00873074_00886771.mRNA mRNA upstream 163529 871944 ~ 886807 (+) True CI01000030_00873074_00886771
CI01000030_00857611_00858359.mRNA mRNA upstream 191478 857470 ~ 858858 (+) True CI01000030_00857611_00858359
CI01000030_01091944_01093682.mRNA mRNA downstream 41009 1091699 ~ 1094481 (+) True CI01000030_01091944_01093682
CI01000030_01134054_01144773.mRNA mRNA downstream 83364 1134054 ~ 1145322 (+) True CI01000030_01134054_01144773
CI01000030_01151171_01165675.mRNA mRNA downstream 100240 1150930 ~ 1165939 (+) True CI01000030_01151171_01165675
CI01000030_01172285_01175092.mRNA mRNA downstream 121505 1172195 ~ 1175095 (+) True CI01000030_01172285_01175092
CI01000030_01218528_01228673.mRNA mRNA downstream 166841 1217531 ~ 1228693 (+) True CI01000030_01218528_01228673
TU178650 other upstream 43649 1003889 ~ 1006687 (+) False G157332
TU178651 other upstream 43649 1003889 ~ 1006687 (+) True G157332
TU178522 other upstream 693853 327649 ~ 356483 (+) True G157227
TU178385 other upstream 903483 116156 ~ 146853 (+) True G157108
TU178347 other upstream 1032580 12878 ~ 17756 (+) True G157076
TU179078 other downstream 586177 1636867 ~ 1638227 (+) True G157726
TU179965 other downstream 1228423 2279113 ~ 2279192 (+) True G158493
TU179886 other downstream 1545186 2595876 ~ 2614293 (+) True G158416
TU180187 other downstream 1962766 3013456 ~ 3013518 (+) True G158703
TU181300 other downstream 3381110 4431800 ~ 4488526 (+) True G159685

Expression Profile