RNA id: TU179980


Basic Information

Item Value
RNA id TU179980
length 2477
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G158508
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2304497 ~ 2312470 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGAATGATGAGGGAGCGCTGACGTTGAAAAGAAGTTGGCGGAGAACTGGGCTACGTTTGCAATCTCATGGGGAAATTGAGAGAGGAACAGCGCGAGATAAGCACAAACCTCGGCATTAGAAAAAATGCTCTGCAAAATAAAGACTCTGCCCTTTTTTAAAGTAAGGAGGATAGTTGAGAGGGCAGAGAATAAGGAGCAGTCCTCATTTTTGAGTCAGCTGTCGCAGTACTCTTTGAAAAACAGGACACGCACCTGGTAGGTAAGAAAAAAAAGTGTGCGTTATAAAACCACAGTGAGCCCAGATCACATCTTTCGCTCTGAGGAGAACAGAAGGCCAAATGCTGAATCTCAACTGGCTTTCTTCTGCATGAGCCTTTCCTTTTTAACCTTCTGATCTTCAGTGCTGGAGGTATCCCTGCCTTTGAAATTTACCCATGAGCACTTTTAACATCTAACCTGTATGTGATATCACACCATCTGGATTCTTTGTTTTCGTTCTCGTCCCACTCATGGGAATCCATCCCTATTTTATTTCTTCCCCAACTGTGCCACATTGAGAAGCTAATTACAGGCGTAGCGTTCGACCCCCGAGGCTGTTAAAAGTACCTTGTCACTGGCTCAGTTTGATGTGCCGTATATGTAGCCGAGTGCAATTAAGACCGGCAAGTCGAACCTCTCTTTCCGTCTCTCTAATTCTCGCTTTTTTTCTCGACGACAGTCTCTGACAGAACAATTTCTCCTCTGTGGGTGAGAAAGTAGGAGATCATGACATAGACTATCAATAACAGATTGAGGGACCACTAGTAGGGGGGATTTTACAGTGGCATATTTTACCTAATTCTTGTCAAATCTTGTCTAATTCAGTCAAGGGTTGATATTTATCTGTGTTAATTGCTAGTTAAGGGCTGTAGAACATAACATAATATTTTGACCCCAAAAATGAAAAGTATGTCATTTATTCACCCTCATGTCTTCCCAAACCCGTATTTTTTTTTTTTTTTTTTGTCTGTGGAGCACAAAAGAAGACACTTTGCAGAGTGTTCAAGCTGCTCTTTTCCATACAATAAAAATGGATGTAGACCCGGGCTGTAACAGCTCCTAAAATGACTAAAAGTACTGTAAAATGATCATTAAAGTGGTTTGTATGACTATATGTGTTCTATATCCTTCTTATTAAATGTGAAATTTAAATGATTATTCACAGAGAACTCCACCGATATGGGTCTGAAATCTCGTTTGTCATCAAGCTGCCAGATTTGACATCATTGACATCAAACATCACATTTTTGTGAAAGTTACAATTGAGGGGAGATTAACGATAACGGCTTTTGATTATTAAAAACCTTTGTTTCTCGCACATATCTATTGTACGGCTACAAAAAACAAAAAACAACTAATTTTATGCTGCTTTTTTGAAGTTTTTTGAAGTTTGAAATGTTGCCATTCACTCATCTCTGCGCTTCAATGGAGGAAATAAAGTCGTATGGGTTTAGAACAACATGAGGATGAATTTTCTTTTTATTTTTGCGTGAATTGCGCAGTTTATGCACTGAAAATCAGGATGAGCACCACTCCTCGCAACCCAAAACACATCAATACTCAGAAATACTGTATAAATTAGGTTAATGTCTTACAAAGAGCAAACCAACGTCAAAACGGTCAAGAAATACTGCATGAGCTAACGGATACCAAGCATTTCCTGGCGGTTTTGATTTGATCCTGCATTTTGAAAAGAAATACAATATTTACATGTTGTACCAACTCTCCCGCTCCATTAATGCTTATGTAAAAATACATAAACAGTTACCTAGAGTGTTTTCTACATTGAAGGTACGAAAGAACTTTCCTCACGGTTGATTCACTAAAATGAGATGGAACATTAACGGATAAAGAGACGGAAAAGTAAAATTGTTATAGTCCTTGTGAGGTCCAGCAGTGCCCCCTCTGATCATAATGGGGGTAGACTGACCCAGGCGAGAAGAGGGAAAAGGTGAAAGGCCGTCGGATATCAAAGATAAGGAGGTTTAGGTGAAAGGCTGGCGGAAAGGAGGGGATTATTTGGTTAGAAATGGCCGTGACCCTCCTGTTGACCTCGATGACCTCCTGAACCGTGCCTCTTGTGCTTTCTGCGCTCGTGGTGGGACTTGTGGTGGTGGCGTCTGTAGCGGTGAGATCTCCGTGACTTTGTACAGATGATCTTGGGTCGGTCCCATTTGCCATTGGCACGACACTTAGTGGTAGGGATGTGGCGCTGGAGGAAACCATCATCGCACTGGTAACGTACCACAGAGTGTATGTCGTAGTGCGAACGCTTCCTACCAATCAGGAAAGCATTGTCCACGGCCGGCGGAGCTCCGCATAGTACTGTGCCTTTCTTGCAGATGTAGGGCAGGTTGTAGTTGCAGGGCACATCGTTCCATTTGCCATTCTCATGGGCGATCATCACCACGCAGTCCTCTCCGCCCGCAAAGAAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179961 lncRNA upstream 42654 2261553 ~ 2261843 (+) True G158490
TU179959 lncRNA upstream 45043 2259229 ~ 2259454 (+) True G158488
TU179958 lncRNA upstream 45993 2258226 ~ 2258504 (+) True G158487
TU179909 lncRNA upstream 130350 2096494 ~ 2174147 (+) True G158439
TU180009 lncRNA downstream 78845 2391315 ~ 2391382 (+) True G158536
TU180021 lncRNA downstream 114024 2426494 ~ 2426775 (+) True G158548
TU180028 lncRNA downstream 134539 2447009 ~ 2447452 (+) True G158555
TU179890 lncRNA downstream 198331 2510801 ~ 2568018 (+) True G158420
TU179906 lncRNA downstream 340174 2652644 ~ 2653106 (+) True G158436
CI01000030_02289500_02291562.mRNA mRNA upstream 12069 2289500 ~ 2292428 (+) True CI01000030_02289500_02291562
CI01000030_02277208_02282376.mRNA mRNA upstream 21754 2277208 ~ 2282743 (+) False CI01000030_02277208_02282376
CI01000030_02260437_02262817.mRNA mRNA upstream 41680 2260380 ~ 2262817 (+) True CI01000030_02260437_02262817
CI01000030_02256592_02257308.mRNA mRNA upstream 46908 2256530 ~ 2257589 (+) True CI01000030_02256592_02257308
CI01000030_02161055_02163914.mRNA mRNA upstream 140583 2160763 ~ 2163914 (+) True CI01000030_02161055_02163914
CI01000030_02423347_02426071.mRNA mRNA downstream 110298 2422768 ~ 2426301 (+) False CI01000030_02423347_02426071
CI01000030_02452403_02456555.mRNA mRNA downstream 139933 2452403 ~ 2456871 (+) True CI01000030_02452403_02456555
CI01000030_02466855_02469633.mRNA mRNA downstream 154115 2466585 ~ 2470573 (+) True CI01000030_02466855_02469633
CI01000030_02472528_02477483.mRNA mRNA downstream 160058 2472528 ~ 2477483 (+) True CI01000030_02472528_02477483
CI01000030_02531026_02532411.mRNA mRNA downstream 218039 2530509 ~ 2534232 (+) False CI01000030_02531026_02532411
TU179965 other upstream 22127 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 666270 1636867 ~ 1638227 (+) True G157726
TU178650 other upstream 1297810 1003889 ~ 1006687 (+) False G157332
TU178651 other upstream 1297810 1003889 ~ 1006687 (+) True G157332
TU178522 other upstream 1948014 327649 ~ 356483 (+) True G157227
TU179886 other downstream 283406 2595876 ~ 2614293 (+) True G158416
TU180187 other downstream 700986 3013456 ~ 3013518 (+) True G158703
TU181300 other downstream 2119330 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 2204308 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 4887465 7199935 ~ 7200017 (+) True G161721

Expression Profile