RNA id: TU179904


Basic Information

Item Value
RNA id TU179904
length 274
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G158434
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2655275 ~ 2655548 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCGCGCAGCGAGCGTCCATCGCGAGGAATTCACCGCTCACATAAAACAGACAAACATCCGCGTCGCGTCCATCAGATGAATAGATCAATCTGCATTGTTTCTTGGACAGCTCGGACACAGGGCCTATTAGCCTCCAGGAAACACTCTCATCTTCTGGAGAAGTCATGGAGGTGGGTTAACTGGGTCATTAACGTGTTGTATTTATTGTATGATATAAACAACGCGATCTATTTCGGCTCACCGACAGTCGCTGATCTCACTGGGTTGTCGCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU179906 lncRNA upstream 2169 2652644 ~ 2653106 (+) True G158436
TU179890 lncRNA upstream 87257 2510801 ~ 2568018 (+) True G158420
TU180028 lncRNA upstream 207823 2447009 ~ 2447452 (+) True G158555
TU180021 lncRNA upstream 228500 2426494 ~ 2426775 (+) True G158548
TU180009 lncRNA upstream 230200 2391315 ~ 2391382 (+) True G158536
TU180039 lncRNA downstream 1425 2656973 ~ 2657187 (+) True G158566
TU180040 lncRNA downstream 2714 2658262 ~ 2658521 (+) True G158567
TU179867 lncRNA downstream 31995 2687543 ~ 2690341 (+) True G158398
TU180058 lncRNA downstream 48218 2703766 ~ 2704041 (+) True CI01000030_02705058_02731134
TU180063 lncRNA downstream 51400 2706948 ~ 2707161 (+) True G158585
CI01000030_02641511_02650047.mRNA mRNA upstream 4736 2641045 ~ 2650539 (+) True CI01000030_02641511_02650047
CI01000030_02620111_02632697.mRNA mRNA upstream 22553 2620111 ~ 2632722 (+) True CI01000030_02620111_02632697
CI01000030_02573116_02582804.mRNA mRNA upstream 72463 2573116 ~ 2582812 (+) True CI01000030_02573116_02582804
CI01000030_02531026_02532411.mRNA mRNA upstream 121043 2530509 ~ 2534232 (+) False CI01000030_02531026_02532411
CI01000030_02472528_02477483.mRNA mRNA upstream 177792 2472528 ~ 2477483 (+) True CI01000030_02472528_02477483
CI01000030_02678940_02684491.mRNA mRNA downstream 23392 2678940 ~ 2684591 (+) True CI01000030_02678940_02684491
CI01000030_02705058_02731134.mRNA mRNA downstream 46263 2701811 ~ 2731151 (+) False CI01000030_02705058_02731134
CI01000030_02843446_02856037.mRNA mRNA downstream 187898 2843446 ~ 2856216 (+) True CI01000030_02843446_02856037
CI01000030_02891265_02897170.mRNA mRNA downstream 235563 2891111 ~ 2898442 (+) True CI01000030_02891265_02897170
CI01000030_02911153_02916952.mRNA mRNA downstream 253852 2909400 ~ 2916952 (+) True CI01000030_02911153_02916952
TU179886 other upstream 40982 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 372905 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 1017048 1636867 ~ 1638227 (+) True G157726
TU178650 other upstream 1648588 1003889 ~ 1006687 (+) False G157332
TU180187 other downstream 357908 3013456 ~ 3013518 (+) True G158703
TU181300 other downstream 1776252 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 1861230 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 4544387 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 5198537 7854085 ~ 7859348 (+) True G161901

Expression Profile