RNA id: TU180158


Basic Information

Item Value
RNA id TU180158
length 222
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G158676
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 2908295 ~ 2908516 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGATCATGATGCAGAACCAAAAACCCCGCAATTTTCAGTATATTATAATACGGAAAAGTTTAAATGTATAATTTTAAATGTATAAATGATATCAAATGTATTGTTTTGGAGGATTTCCGTACATTATACTCACAAAACGCGTTTTGGTTAGTTACAATGACAGAGCCTGCAATTTTCTGAAAATCAAAGATGTCGAAATAATTTTGAAACTTTACATACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180145 lncRNA upstream 26139 2881841 ~ 2882156 (+) True G158664
TU180141 lncRNA upstream 31300 2876743 ~ 2876995 (+) True G158660
TU180063 lncRNA upstream 201134 2706948 ~ 2707161 (+) True G158585
TU180058 lncRNA upstream 204254 2703766 ~ 2704041 (+) True CI01000030_02705058_02731134
TU179867 lncRNA upstream 217954 2687543 ~ 2690341 (+) True G158398
TU180163 lncRNA downstream 60141 2968657 ~ 2970230 (+) True G158681
TU180251 lncRNA downstream 241282 3149798 ~ 3150010 (+) True CI01000030_03139836_03149991
TU180259 lncRNA downstream 254727 3163243 ~ 3163472 (+) True G158767
TU180260 lncRNA downstream 263978 3172494 ~ 3177964 (+) True CI01000030_03172301_03180142
TU180266 lncRNA downstream 298482 3206998 ~ 3207286 (+) True G158774
CI01000030_02891265_02897170.mRNA mRNA upstream 9853 2891111 ~ 2898442 (+) True CI01000030_02891265_02897170
CI01000030_02843446_02856037.mRNA mRNA upstream 52079 2843446 ~ 2856216 (+) True CI01000030_02843446_02856037
CI01000030_02705058_02731134.mRNA mRNA upstream 177144 2701811 ~ 2731151 (+) False CI01000030_02705058_02731134
CI01000030_02678940_02684491.mRNA mRNA upstream 223704 2678940 ~ 2684591 (+) True CI01000030_02678940_02684491
CI01000030_02641511_02650047.mRNA mRNA upstream 257756 2641045 ~ 2650539 (+) True CI01000030_02641511_02650047
CI01000030_02911153_02916952.mRNA mRNA downstream 884 2909400 ~ 2916952 (+) True CI01000030_02911153_02916952
CI01000030_02919390_02954905.mRNA mRNA downstream 10874 2919390 ~ 2955425 (+) True CI01000030_02919390_02954905
CI01000030_03018776_03042194.mRNA mRNA downstream 110260 3018776 ~ 3042194 (+) False CI01000030_03018776_03042194
CI01000030_03058744_03059657.mRNA mRNA downstream 147355 3055871 ~ 3059667 (+) True CI01000030_03058744_03059657
CI01000030_03060378_03062683.mRNA mRNA downstream 151811 3060327 ~ 3063096 (+) True CI01000030_03060378_03062683
TU179886 other upstream 294002 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 625925 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 1270068 1636867 ~ 1638227 (+) True G157726
TU178650 other upstream 1901608 1003889 ~ 1006687 (+) False G157332
TU180187 other downstream 104940 3013456 ~ 3013518 (+) True G158703
TU181300 other downstream 1523284 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 1608262 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 4291419 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 4945569 7854085 ~ 7859348 (+) True G161901

Expression Profile