RNA id: TU180988


Basic Information

Item Value
RNA id TU180988
length 476
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G159420
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3532793 ~ 3533268 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATATATACAGTGGGTACGGAAAGTATTCAGACCCCCTTAAATTTTTCACTCTTTGTTATATTGCAGCCATTTGCTAAAATCATTTAAATTCATTTTTTTTCCTCATTAATGTACACACAGCACCCCATATTGACAGAAAAACACAGAATTGTTGACATTTTTGCAGATTTAATAAAAAAGAAAAACTGAAATATCACATGGTCCTAAGTATTCAGACCCTTTGCTGTGACACTCATATATTTAACTCAGGTGCTGTCCATTTCTTCTGATCATCCTTGAGATGGTTCCACACCTTCATTTGAGTCCTGCTGTGTTTGATTATACTGATTGGACTTGATTAGGAAAGCCACACACCTGTCTATATAAGACCTTACAGCTCACAGTACATGTCAGAGCAAATGAGAATCATGAGGTCAAAGGAACTGCCTGAAAAGCTCAGAGACAGAATTGTGGCAAGGCACAGATCTGACCANN

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU180986 lncRNA upstream 1189 3531334 ~ 3531604 (+) True G159418
TU180985 lncRNA upstream 1768 3530797 ~ 3531025 (+) True G159417
TU180828 lncRNA upstream 215491 3316961 ~ 3317302 (+) True G159261
TU180792 lncRNA upstream 290141 3242211 ~ 3242652 (+) True CI01000030_03238201_03242662
TU180791 lncRNA upstream 291018 3241496 ~ 3241775 (+) True G159234
TU181002 lncRNA downstream 12125 3545393 ~ 3547030 (+) True G159433
TU181003 lncRNA downstream 14252 3547520 ~ 3547738 (+) True G159434
TU181006 lncRNA downstream 28248 3561516 ~ 3562293 (+) True G159437
TU181022 lncRNA downstream 110722 3643990 ~ 3644461 (+) True G159452
TU181023 lncRNA downstream 111711 3644979 ~ 3645233 (+) True G159453
CI01000030_03253246_03261669.mRNA mRNA upstream 270850 3253246 ~ 3261943 (+) True CI01000030_03253246_03261669
CI01000030_03238201_03242662.mRNA mRNA upstream 289891 3237992 ~ 3242902 (+) False CI01000030_03238201_03242662
CI01000030_03229393_03232355.mRNA mRNA upstream 300339 3229281 ~ 3232454 (+) True CI01000030_03229393_03232355
CI01000030_03218927_03220573.mRNA mRNA upstream 311788 3218927 ~ 3221005 (+) True CI01000030_03218927_03220573
CI01000030_03202618_03204279.mRNA mRNA upstream 327733 3202573 ~ 3205060 (+) True CI01000030_03202618_03204279
CI01000030_03565934_03569916.mRNA mRNA downstream 32517 3565785 ~ 3570730 (+) True CI01000030_03565934_03569916
CI01000030_03580764_03584676.mRNA mRNA downstream 47496 3580764 ~ 3585255 (+) True CI01000030_03580764_03584676
CI01000030_03594936_03629403.mRNA mRNA downstream 61668 3594936 ~ 3629485 (+) True CI01000030_03594936_03629403
CI01000030_03703231_03704355.mRNA mRNA downstream 168905 3702173 ~ 3704615 (+) False CI01000030_03703231_03704355
CI01000030_03715463_03716370.mRNA mRNA downstream 181343 3714611 ~ 3717569 (+) False CI01000030_03715463_03716370
TU180187 other upstream 489020 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 918500 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 1250423 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 1894566 1636867 ~ 1638227 (+) True G157726
TU178651 other upstream 2526106 1003889 ~ 1006687 (+) True G157332
TU181300 other downstream 898532 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 983510 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 3666667 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 4320817 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 4704697 8237965 ~ 8239604 (+) True G162088

Expression Profile