RNA id: TU181028


Basic Information

Item Value
RNA id TU181028
length 383
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G159458
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3690049 ~ 3690431 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCACAAAGTATCTATCCGTTTTGCTTGCCCTGCACATGGTAAACTGACCCCAGCTGACTTCACCCGCTTGGAGGCCAGTCAACGGACACTAAAACGAAGGCACCCACCTTACCAGCACCCTGGGAAAAGGACCATCAACCCACCATGTTGATTAGCAGCGATACAAGTGCTTACCAAATGCCTTGGGTAGATAAGACAAGACCAGACACCTGAGCATGCCTGAGACTGTTTCATTGCACAAAAACTTGCTGGTTACATTTCACCCAAAAAAAAAAAAAAAAAAAAAAAATGTATACACATTTTATAAAATTATTTTATATAGTAATTAATTTAGCCTATTTTTCAGTATTTCTTTTTGTGACATCATTTTTATGACATTGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181023 lncRNA upstream 44816 3644979 ~ 3645233 (+) True G159453
TU181022 lncRNA upstream 45588 3643990 ~ 3644461 (+) True G159452
TU181006 lncRNA upstream 127756 3561516 ~ 3562293 (+) True G159437
TU181003 lncRNA upstream 142311 3547520 ~ 3547738 (+) True G159434
TU181002 lncRNA upstream 143019 3545393 ~ 3547030 (+) True G159433
TU181029 lncRNA downstream 801 3691232 ~ 3691471 (+) True G159459
TU181030 lncRNA downstream 1402 3691833 ~ 3692126 (+) True G159460
TU181031 lncRNA downstream 1947 3692378 ~ 3692627 (+) True G159461
TU181034 lncRNA downstream 4224 3694655 ~ 3694895 (+) True G159464
TU181035 lncRNA downstream 4525 3694956 ~ 3695289 (+) True G159465
CI01000030_03594936_03629403.mRNA mRNA upstream 60564 3594936 ~ 3629485 (+) True CI01000030_03594936_03629403
CI01000030_03580764_03584676.mRNA mRNA upstream 104794 3580764 ~ 3585255 (+) True CI01000030_03580764_03584676
CI01000030_03565934_03569916.mRNA mRNA upstream 119319 3565785 ~ 3570730 (+) True CI01000030_03565934_03569916
CI01000030_03253246_03261669.mRNA mRNA upstream 428106 3253246 ~ 3261943 (+) True CI01000030_03253246_03261669
CI01000030_03238201_03242662.mRNA mRNA upstream 447147 3237992 ~ 3242902 (+) False CI01000030_03238201_03242662
CI01000030_03703231_03704355.mRNA mRNA downstream 11742 3702173 ~ 3704615 (+) False CI01000030_03703231_03704355
CI01000030_03715463_03716370.mRNA mRNA downstream 24180 3714611 ~ 3717569 (+) False CI01000030_03715463_03716370
CI01000030_03744173_03745628.mRNA mRNA downstream 53060 3743491 ~ 3745741 (+) True CI01000030_03744173_03745628
CI01000030_03765594_03778884.mRNA mRNA downstream 74631 3765062 ~ 3779032 (+) True CI01000030_03765594_03778884
CI01000030_03825765_03826754.mRNA mRNA downstream 134984 3825415 ~ 3826794 (+) True CI01000030_03825765_03826754
TU180187 other upstream 646276 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 1075756 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 1407679 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 2051822 1636867 ~ 1638227 (+) True G157726
TU178651 other upstream 2683362 1003889 ~ 1006687 (+) True G157332
TU181300 other downstream 741369 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 826347 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 3509504 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 4163654 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 4547534 8237965 ~ 8239604 (+) True G162088

Expression Profile