RNA id: TU181034


Basic Information

Item Value
RNA id TU181034
length 241
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G159464
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3694655 ~ 3694895 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTCATCATTTAAATAAGCAGTGTGGTGGAGTTATTTAAGTGTACCTGACAATTGATTTCAACCAATCCAAGTGTGATTTTAATGTCATTTGACTCTCAGTAATAATAGACTGTCAATGAGACCGATTAAGACATATTTTTCTCTTTGAAATATACCTCCTGGAGTTCATTGTTGGGAAATCTGCAGGGGTTTTATCTAGTCCTGTCATAGCGTGAAATCTCTCTCTCACTGACTTGCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181031 lncRNA upstream 2028 3692378 ~ 3692627 (+) True G159461
TU181030 lncRNA upstream 2529 3691833 ~ 3692126 (+) True G159460
TU181029 lncRNA upstream 3184 3691232 ~ 3691471 (+) True G159459
TU181028 lncRNA upstream 4224 3690049 ~ 3690431 (+) True G159458
TU181023 lncRNA upstream 49422 3644979 ~ 3645233 (+) True G159453
TU181035 lncRNA downstream 61 3694956 ~ 3695289 (+) True G159465
TU180957 lncRNA downstream 2341 3697236 ~ 3701156 (+) True G159389
TU181042 lncRNA downstream 22050 3716945 ~ 3717460 (+) True CI01000030_03715463_03716370
TU181053 lncRNA downstream 68153 3763048 ~ 3763283 (+) True G159483
TU181117 lncRNA downstream 114529 3809424 ~ 3809647 (+) True G159545
CI01000030_03594936_03629403.mRNA mRNA upstream 65170 3594936 ~ 3629485 (+) True CI01000030_03594936_03629403
CI01000030_03580764_03584676.mRNA mRNA upstream 109400 3580764 ~ 3585255 (+) True CI01000030_03580764_03584676
CI01000030_03565934_03569916.mRNA mRNA upstream 123925 3565785 ~ 3570730 (+) True CI01000030_03565934_03569916
CI01000030_03253246_03261669.mRNA mRNA upstream 432712 3253246 ~ 3261943 (+) True CI01000030_03253246_03261669
CI01000030_03238201_03242662.mRNA mRNA upstream 451753 3237992 ~ 3242902 (+) False CI01000030_03238201_03242662
CI01000030_03703231_03704355.mRNA mRNA downstream 7278 3702173 ~ 3704615 (+) False CI01000030_03703231_03704355
CI01000030_03715463_03716370.mRNA mRNA downstream 19716 3714611 ~ 3717569 (+) False CI01000030_03715463_03716370
CI01000030_03744173_03745628.mRNA mRNA downstream 48596 3743491 ~ 3745741 (+) True CI01000030_03744173_03745628
CI01000030_03765594_03778884.mRNA mRNA downstream 70167 3765062 ~ 3779032 (+) True CI01000030_03765594_03778884
CI01000030_03825765_03826754.mRNA mRNA downstream 130520 3825415 ~ 3826794 (+) True CI01000030_03825765_03826754
TU180187 other upstream 650882 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 1080362 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 1412285 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 2056428 1636867 ~ 1638227 (+) True G157726
TU178651 other upstream 2687968 1003889 ~ 1006687 (+) True G157332
TU181300 other downstream 736905 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 821883 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 3505040 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 4159190 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 4543070 8237965 ~ 8239604 (+) True G162088

Expression Profile