RNA id: TU181055



Basic Information


Item Value
RNA id TU181055
length 710
lncRNA type read_through
GC content 0.37
exon number 2
gene id G159484
representative True

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 3851992 ~ 3919867 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TATGTTTTTTTTTTTTTTTTTTTTTTTTTGTGGTGTAGGGTGAGCATTTTTTATTTTGCACACTGTAGCAAACATGCATACAGATCCTATTGAGGCCATAACTAAAAACTCAAATTCATGCACACATCAAGAAAGAAAACACAACAACTTGAAGCCAACGGTAAAAAGAAAATCAACATATCAGCAAAGAAAACCATGAATCTACATACATTGTTGCATGAGAGATCTTATCCATAAATATTATGCTCTAAAAATGATCATGTGTGGGAATGGGTAAAGGGGAATCAGCAAAGAATCCAATTACACTGGAAGTGAAGCCCAGTGGTAATGGCTTAAAAACTAATGGTCACTGTAGAAATTTGGTTTACACTAGTGCAAATACGACTGAAAATACAGCACAACCCTTACAGGAACTACAACGTAGTAATTAACAGGTGGAGGAGAGAGAGAAAAAAAAAAAAAAAAAAAAAAACAATTTGACACATTCATACTATGTTTATTTTAATGGTGACCATGTTGGGTGAGATACAGCATAGTTATTAGAAGCAAAATGTGATTGATAAGCATTATTCGTCACTATCGGTGTCTCTTTCGATGCTGTAAGCCATGAAGAAAGCGTCGGGGCGGGTTGGGACGAGGGGATGACCCGGTCTCACAATCTCAAAGCCCATGAAACTGAATGTCCGCAGCAGCGATGCTGGAGATGGTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU181147 lncRNA upstream 11071 3843788 ~ 3843996 (+) True G159561
TU181128 lncRNA upstream 30516 3824287 ~ 3824551 (+) True G159556
TU181125 lncRNA upstream 35021 3819821 ~ 3820046 (+) True G159553
TU181124 lncRNA upstream 38068 3816762 ~ 3816999 (+) True G159552
TU181120 lncRNA upstream 43087 3811732 ~ 3811980 (+) True G159548
TU181190 lncRNA downstream 14256 3934123 ~ 3934444 (+) True G159593
TU181201 lncRNA downstream 54363 3974230 ~ 3974587 (+) True G159604
TU181230 lncRNA downstream 106667 4026534 ~ 4028557 (+) True G159631
TU181329 lncRNA downstream 208516 4128383 ~ 4128777 (+) True G159714
TU181342 lncRNA downstream 219116 4138983 ~ 4139239 (+) True G159727
CI01000030_03838027_03838812.mRNA mRNA upstream 14122 3836328 ~ 3840945 (+) True CI01000030_03838027_03838812
CI01000030_03825765_03826754.mRNA mRNA upstream 28273 3825415 ~ 3826794 (+) True CI01000030_03825765_03826754
CI01000030_03765594_03778884.mRNA mRNA upstream 76035 3765062 ~ 3779032 (+) True CI01000030_03765594_03778884
CI01000030_03744173_03745628.mRNA mRNA upstream 109326 3743491 ~ 3745741 (+) True CI01000030_03744173_03745628
CI01000030_03715463_03716370.mRNA mRNA upstream 137498 3714611 ~ 3717569 (+) False CI01000030_03715463_03716370
CI01000030_03926592_03926762.mRNA mRNA downstream 6725 3926592 ~ 3927205 (+) True CI01000030_03926592_03926762
CI01000030_04070253_04083457.mRNA mRNA downstream 149580 4069447 ~ 4083892 (+) True CI01000030_04070253_04083457
CI01000030_04163915_04171784.mRNA mRNA downstream 244048 4163915 ~ 4171907 (+) True CI01000030_04163915_04171784
CI01000030_04183583_04213798.mRNA mRNA downstream 263716 4183583 ~ 4213798 (+) True CI01000030_04183583_04213798
CI01000030_04219745_04223677.mRNA mRNA downstream 299878 4219745 ~ 4224790 (+) True CI01000030_04219745_04223677
TU180187 other upstream 811294 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 1240774 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 1572697 2279113 ~ 2279192 (+) True G158493
TU179078 other upstream 2216840 1636867 ~ 1638227 (+) True G157726
TU178651 other upstream 2848380 1003889 ~ 1006687 (+) True G157332
TU181300 other downstream 511933 4431800 ~ 4488526 (+) True G159685
TU181432 other downstream 596911 4516778 ~ 4517107 (+) False G159816
TU183621 other downstream 3280068 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 3934218 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 4318098 8237965 ~ 8239604 (+) True G162088

Expression Profile