RNA id: TU181480


Basic Information

Item Value
RNA id TU181480
length 209
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G159858
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 4617343 ~ 4617551 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAATGTCCTATAGTAATAGTCCCCTAAACATTCCCAAAATGTCCTGAATGTTCCCTGAAGGTCCACCAAATAACGTCCCCCAACCCTTAAAAGAACTCCACATCGTGACCGTCTCTGAACGTTCTGGGAACGTTACTAGGCAACGTCCTTAACACCAGTGGGGACGTTCTGAGAATGTTCTGGGAATGTAAAATTTCTAGCGGGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU181433 lncRNA upstream 99962 4516821 ~ 4517381 (+) True G159816
TU181431 lncRNA upstream 100236 4516821 ~ 4517107 (+) False G159816
TU181363 lncRNA upstream 287811 4329277 ~ 4329532 (+) True G159748
TU181359 lncRNA upstream 293242 4323890 ~ 4324101 (+) True G159744
TU181357 lncRNA upstream 297769 4319170 ~ 4319574 (+) True G159742
TU181485 lncRNA downstream 15637 4633188 ~ 4633460 (+) True G159863
TU181460 lncRNA downstream 60613 4678164 ~ 4680912 (+) True G159841
TU181453 lncRNA downstream 120251 4737802 ~ 4738514 (+) False G159836
TU181454 lncRNA downstream 120897 4738448 ~ 4738938 (+) True G159836
TU181509 lncRNA downstream 127479 4745030 ~ 4745324 (+) True G159887
CI01000030_04588910_04589122.mRNA mRNA upstream 28166 4587884 ~ 4589177 (+) True CI01000030_04588910_04589122
CI01000030_04575377_04586894.mRNA mRNA upstream 30416 4575074 ~ 4586927 (+) True CI01000030_04575377_04586894
CI01000030_04552559_04571086.mRNA mRNA upstream 44342 4549946 ~ 4573001 (+) True CI01000030_04552559_04571086
CI01000030_04454078_04461414.mRNA mRNA upstream 155229 4451936 ~ 4462114 (+) True CI01000030_04454078_04461414
CI01000030_04393891_04405162.mRNA mRNA upstream 211725 4391950 ~ 4405618 (+) True CI01000030_04393891_04405162
CI01000030_04708812_04716224.mRNA mRNA downstream 91026 4708577 ~ 4717703 (+) True CI01000030_04708812_04716224
CI01000030_04730959_04734987.mRNA mRNA downstream 112150 4729701 ~ 4734987 (+) True CI01000030_04730959_04734987
CI01000030_04794796_04802874.mRNA mRNA downstream 177091 4794642 ~ 4802932 (+) True CI01000030_04794796_04802874
CI01000030_04804199_04820916.mRNA mRNA downstream 186648 4804199 ~ 4821266 (+) True CI01000030_04804199_04820916
CI01000030_04822608_04834394.mRNA mRNA downstream 205057 4822608 ~ 4834400 (+) True CI01000030_04822608_04834394
TU181432 other upstream 100236 4516778 ~ 4517107 (+) False G159816
TU181300 other upstream 128817 4431800 ~ 4488526 (+) True G159685
TU180187 other upstream 1573570 3013456 ~ 3013518 (+) True G158703
TU179886 other upstream 2003050 2595876 ~ 2614293 (+) True G158416
TU179965 other upstream 2334973 2279113 ~ 2279192 (+) True G158493
TU183621 other downstream 2582384 7199935 ~ 7200017 (+) True G161721
TU183810 other downstream 3236534 7854085 ~ 7859348 (+) True G161901
TU184054 other downstream 3620414 8237965 ~ 8239604 (+) True G162088
TU183922 other downstream 3927031 8544582 ~ 8548325 (+) True G161986
TU184111 other downstream 3950459 8568010 ~ 8571726 (+) True G162137

Expression Profile