RNA id: TU183904


Basic Information

Item Value
RNA id TU183904
length 3037
lncRNA type read_through
GC content 0.33
exon number 3
gene id G161977
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8032350 ~ 8111022 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTGTTTTATTTTATTTTATTTTTGACAATATTTTTTGGCAAACCATTGAGTTTTTTTTTTTTACAACCCGAAACTTTTACTCTGCAATGCACATTTTATGTTATTTTATTTATTTTACACTCAGGTTTTTATTTTTTTATTTTATTTTATTTTATTTTATTTTAGAGTTATTTTAGAGTTATTTTAGACAACATATTTGGCAGTTTTTTTACAACCCAAAACTTTTACTCTGCAATGCACATTTTATGTTATTTTATTTTATTTATTTATTTTTTATTTTATTTTTATTTATTTATTTTTTTGACAAATATTTGACAGTTTTTTTTTTTGTTTGTTTTTTTTACTCTGCTATGCACATTTTATGTTATTTTATTTAATTTATGGTCAGGTTTTTATTTTATTTTATTGATAACATTTTTGGCAAATATTTGACAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGTTTCATTGTCTTTACTTCAAAGTTCACAACTAAAAGCACAAGACCATTCTTTTAAAATTTTGTCAATACAAGTTTTTTTATAGAACAGGGAAAACATTTTTTTAACAGTTTGAGGATGTTCACCTCCAGTGCTAACAACGGTTCTGGCAACTGTACAGAGGCAAACATCAGTGGCAAATTTGTTCATTATCAAACACATTGATTCCTCTACTGTTCTCGGACATACATAAGTCTCTTTGTAAACTTTTGAACATTTCTTCTTCTCAAGACCACTGCTAAATATTCAGTGGTAAAGTGCTGTAGCGAAAATGGAAACATTATTAAATTCTTCCCCCAAGATAATAACAAAGCTAAGAATATGTATTACAATATTTAGCTGTAATGTTTTCAGTGTCTGTATGTATCTATGTACAAATGGGTTTACTGTTACAAGAGCAAAAGATGAACTATTGCGCAGTATTGTACATCGTTCTAGATAACAAATGAATCTGGTTTTCAAGAATGAACATGAATTATAGAAGTTACTTTCTCTCAATATATGTGTGCAAAACAAGACATCACTTCCATTTACCACCAGGCTGCAACAACCAATAGGATTAGATGGCGTAAGTGACATCACAATGGCCATTATATAATCATGTCAGTGGTAAATCAAAGCCATTGTTTTTCTGGTACAGCGACTGTGTCATTAAGGGGCATAAATGTATAACGCATCGTTTAAATGTCGCTATTCGTGCAACATGTTGATTGTGATCTTGCAGAACAGGAATACGAATATTACTTTCTTCTGAAAGAAAATAAGAACAATGTAGCTCAATATTTCCGCAGGAAAAAAACGTAGAGAACAAATAACGCTCTCAGCTTTTGTAGGCACAATGGTAAATGTGGCAAATGCTTAAAAAACATCATCCCAAACCCTCCAAAATGAATCATAACCAAAGTTGAATTAAAATGTCAGAATCAAACATCACTCGTTTTATGAACCAATAATAAAATCCAGTTACATTTCCATTCAAAGTAAATGTGCTGCCCGCGTTCTCCACCAACTTGTGTCCTTGCCTTCAGAATTCAGTACTTTAAAATGTAGATGGTAAACTTTTTCGCTCAAATGAGCGCGCATGTACATTTTAGATATGACATCTGGTCCAAACAGAATTGTTTAGGCTACATTGAGCAGCTTAAAAAAATTCAGGGCTCCACTGGAATTAAATGTGAATAAAACAAACATCGAAGAAGTCCAGATACAAACAGTCACTCTTCACTGCTAGACGCAAGTTGCTAAAAGACTTTGAGTGGACAAATTGCACTAAAACAAAGATGAGCATTTTTTTTTTTTTTTTTTCACAAACGTGGGATGCTGCGATCAACAGTATCTGATTTTTTCAGTTTGCCTTTGTTGAAGGACTGGATGGAGCTGAGGAGGGCGCCCCGGCCCACGCCGTTGACACTGGGAGGTGAGAGGGACGGAGGGACGGGTTCACTCCCAGGAGGAGGAGGGGGAGGAGGAGGAGGAGCAGCAGCGGGGGGAGGAAGAGGAGGTGCTGGAGGTGCTCCTGCGGGAATCAGAAAACAGTCCATCAATATCGGTCACGTTTTAGTAATATACCTACTCAGAATCCTTTGCGGTATGTAAACAGGAAGTTATAAAATACAACAGCTATTCAGAATGATACACTTACCACAAAAGGCAACATTTAAAGTCAACATGAAAGTAATTAGCAACTGATATTGATTTTTTTGATGGCCAATGTCTTAGAAAGCGGAGTGGCCAATGGCCAATATAAACCATATATATCATATTTTTTTCAAATAAAAACAAGTTAACACTAATTTTACATACAGCACACAGTGAAAATGACATTAATATGACAGTTGACAAAAGAATATAGCGCAGCATTGTTTGAAATCAAGGGTTTAAAGTTTGTTGTTTGCGCGTCTCTCCTGTCTGCATTCAATTCGCACAGAGTAACCTGTTTTTATGCAGTCTACAAATACACACTTCGGAAGATCTCACATCTGAATGTGACAAAGTCTGCAAGGTTTGTGAAATTAAATGTTAGTGTTATTAGATATTCAAAGACTTAAATTATATAAATGCGTATTTGCTGAATGCTGACGATAGATAGTGTTTGCCTTTCTATTACTAATAATATAAAAGCAAAAGCTAGAATATGTTTTCATATACCGTTTACTTTCTTTGTTTACCAGATTTATCTACTAACATATTATATAGGACTGTTAAACAGAGATGGAAAAACTAATACGGAGAATGGGAGCATTGTGTGCTAAGGTACTGGCATTCTCAGCGCTGTCAAAATAAAAGTCCTGCTCCTGACACACCGACCGATGCCGATAATTACAAAAAAATCCAGATATCGGCCGATATATCAGTCTTGGTGCTATATCGATTGACCACTATGAAAAAATACTATGAAATAAAATAGCATTATTTATTACATAATTCAAATTTATTTAAATTTATATTTAATAAGCAAAGTTATTTAATAAGATTCAATAAATAATATATTATGATATAAAATGTACTAATAGAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183956 lncRNA upstream 43175 7988580 ~ 7989175 (+) True G162015
TU183893 lncRNA upstream 44201 7986556 ~ 7988149 (+) False G161974
TU183896 lncRNA upstream 44201 7986556 ~ 7988149 (+) False G161974
TU183897 lncRNA upstream 44201 7986556 ~ 7988149 (+) True G161974
TU183869 lncRNA upstream 159162 7859914 ~ 7873188 (+) True G161954
TU184032 lncRNA downstream 45814 8156836 ~ 8158695 (+) True CI01000030_08155452_08158318
TU184031 lncRNA downstream 58334 8169356 ~ 8169574 (+) False CI01000030_08168074_08174577
TU184030 lncRNA downstream 63377 8174399 ~ 8174610 (+) True CI01000030_08168074_08174577
TU184036 lncRNA downstream 76358 8187380 ~ 8187595 (+) True G162074
TU184046 lncRNA downstream 86722 8197744 ~ 8198028 (+) True G162080
CI01000030_07990330_08009606.mRNA mRNA upstream 22195 7990330 ~ 8010155 (+) True CI01000030_07990330_08009606
CI01000030_07968740_07975571.mRNA mRNA upstream 56629 7968676 ~ 7975721 (+) True CI01000030_07968740_07975571
CI01000030_07967106_07968408.mRNA mRNA upstream 63766 7967106 ~ 7968584 (+) True CI01000030_07967106_07968408
CI01000030_07954583_07955459.mRNA mRNA upstream 75876 7954583 ~ 7956474 (+) True CI01000030_07954583_07955459
CI01000030_07924704_07945878.mRNA mRNA upstream 86411 7924704 ~ 7945939 (+) True CI01000030_07924704_07945878
CI01000030_08133065_08140755.mRNA mRNA downstream 22043 8133065 ~ 8140998 (+) True CI01000030_08133065_08140755
CI01000030_08150901_08154024.mRNA mRNA downstream 39879 8150901 ~ 8154024 (+) True CI01000030_08150901_08154024
CI01000030_08155452_08158318.mRNA mRNA downstream 44430 8155452 ~ 8158709 (+) False CI01000030_08155452_08158318
CI01000030_08159242_08166884.mRNA mRNA downstream 48220 8159242 ~ 8166945 (+) True CI01000030_08159242_08166884
CI01000030_08168074_08174577.mRNA mRNA downstream 56905 8167927 ~ 8174662 (+) False CI01000030_08168074_08174577
TU183810 other upstream 159578 7854085 ~ 7859348 (+) True G161901
TU183621 other upstream 829865 7199935 ~ 7200017 (+) True G161721
TU181432 other upstream 3515243 4516778 ~ 4517107 (+) False G159816
TU181300 other upstream 3543824 4431800 ~ 4488526 (+) True G159685
TU180187 other upstream 4988577 3013456 ~ 3013518 (+) True G158703
TU184054 other downstream 126943 8237965 ~ 8239604 (+) True G162088
TU183922 other downstream 433560 8544582 ~ 8548325 (+) True G161986
TU184111 other downstream 456988 8568010 ~ 8571726 (+) True G162137
TU184486 other downstream 1245381 9356403 ~ 9357014 (+) False G162449
TU184485 other downstream 1245537 9356559 ~ 9357014 (+) False G162449

Expression Profile