Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU184054 |
| length | 1640 |
| RNA type | TUCP |
| GC content | 0.41 |
| exon number | 1 |
| gene id | G162088 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000030 |
| NCBI id | null |
| chromosome length | 11638347 |
| location | 8237965 ~ 8239604 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU184053 | lncRNA | upstream | 282 | 8237338 ~ 8237683 (+) | True | G162087 |
| TU184046 | lncRNA | upstream | 39937 | 8197744 ~ 8198028 (+) | True | G162080 |
| TU184036 | lncRNA | upstream | 50370 | 8187380 ~ 8187595 (+) | True | G162074 |
| TU184030 | lncRNA | upstream | 63355 | 8174399 ~ 8174610 (+) | True | CI01000030_08168074_08174577 |
| TU184031 | lncRNA | upstream | 68391 | 8169356 ~ 8169574 (+) | False | CI01000030_08168074_08174577 |
| TU184057 | lncRNA | downstream | 10074 | 8249678 ~ 8249892 (+) | True | G162091 |
| TU184058 | lncRNA | downstream | 10394 | 8249998 ~ 8250302 (+) | True | G162092 |
| TU184063 | lncRNA | downstream | 30470 | 8270074 ~ 8270414 (+) | True | G162097 |
| TU184070 | lncRNA | downstream | 43455 | 8283059 ~ 8283528 (+) | True | G162103 |
| TU184072 | lncRNA | downstream | 60017 | 8299621 ~ 8299855 (+) | True | G162105 |
| CI01000030_08168074_08174577.mRNA | mRNA | upstream | 63303 | 8167927 ~ 8174662 (+) | False | CI01000030_08168074_08174577 |
| CI01000030_08159242_08166884.mRNA | mRNA | upstream | 71020 | 8159242 ~ 8166945 (+) | True | CI01000030_08159242_08166884 |
| CI01000030_08155452_08158318.mRNA | mRNA | upstream | 79256 | 8155452 ~ 8158709 (+) | False | CI01000030_08155452_08158318 |
| CI01000030_08150901_08154024.mRNA | mRNA | upstream | 83941 | 8150901 ~ 8154024 (+) | True | CI01000030_08150901_08154024 |
| CI01000030_08133065_08140755.mRNA | mRNA | upstream | 96967 | 8133065 ~ 8140998 (+) | True | CI01000030_08133065_08140755 |
| CI01000030_08555726_08559327.mRNA | mRNA | downstream | 315775 | 8555379 ~ 8559397 (+) | False | CI01000030_08555726_08559327 |
| CI01000030_08763819_08775586.mRNA | mRNA | downstream | 524126 | 8763730 ~ 8775772 (+) | True | CI01000030_08763819_08775586 |
| CI01000030_08837486_08838040.mRNA | mRNA | downstream | 597617 | 8837221 ~ 8838451 (+) | True | CI01000030_08837486_08838040 |
| CI01000030_08845484_08861801.mRNA | mRNA | downstream | 605880 | 8845484 ~ 8861801 (+) | True | CI01000030_08845484_08861801 |
| CI01000030_08862264_08875155.mRNA | mRNA | downstream | 622660 | 8862264 ~ 8875155 (+) | True | CI01000030_08862264_08875155 |
| TU183810 | other | upstream | 365193 | 7854085 ~ 7859348 (+) | True | G161901 |
| TU183621 | other | upstream | 1035480 | 7199935 ~ 7200017 (+) | True | G161721 |
| TU181432 | other | upstream | 3720858 | 4516778 ~ 4517107 (+) | False | G159816 |
| TU181300 | other | upstream | 3749439 | 4431800 ~ 4488526 (+) | True | G159685 |
| TU180187 | other | upstream | 5194192 | 3013456 ~ 3013518 (+) | True | G158703 |
| TU183922 | other | downstream | 304978 | 8544582 ~ 8548325 (+) | True | G161986 |
| TU184111 | other | downstream | 328406 | 8568010 ~ 8571726 (+) | True | G162137 |
| TU184486 | other | downstream | 1116799 | 9356403 ~ 9357014 (+) | False | G162449 |
| TU184485 | other | downstream | 1116955 | 9356559 ~ 9357014 (+) | False | G162449 |
| TU184353 | other | downstream | 1803189 | 10042793 ~ 10042887 (+) | True | G162323 |
