RNA id: TU184063


Basic Information

Item Value
RNA id TU184063
length 341
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G162097
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8270074 ~ 8270414 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAACACGTGAGGTAGAGGAGAAACTGCAGATCTGTATTTGTGCGTCAATAGAAGTTTAGTATTTTTATCTTGGTCTGTCACTGTTTCACTTACCAAACCGCATCCTGGGTCAGAGGGATCAAGGCAGACCATGTGAAATGACAGAGTGCTTTAAAAAGACCCAGCTTCCTGTGACAGTAAAGTGAAGTCTACCATGTTTGTCCTTTCCTCTACAAATATTGACTTTGTCTCTGTTCAAAGAAAGCACACAACTGAGGGAACAATGCAGAGTGTAGATTCCCAGCAAAGACTGACACACAAAAGTGATAAATCCTAGTTTGTATTCAGTCCTATCAGCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184058 lncRNA upstream 19772 8249998 ~ 8250302 (+) True G162092
TU184057 lncRNA upstream 20182 8249678 ~ 8249892 (+) True G162091
TU184053 lncRNA upstream 32391 8237338 ~ 8237683 (+) True G162087
TU184046 lncRNA upstream 72046 8197744 ~ 8198028 (+) True G162080
TU184036 lncRNA upstream 82479 8187380 ~ 8187595 (+) True G162074
TU184070 lncRNA downstream 12645 8283059 ~ 8283528 (+) True G162103
TU184072 lncRNA downstream 29207 8299621 ~ 8299855 (+) True G162105
TU184075 lncRNA downstream 76510 8346924 ~ 8347253 (+) True G162108
TU183949 lncRNA downstream 78987 8349401 ~ 8350756 (+) True G162008
TU184077 lncRNA downstream 92729 8363143 ~ 8363451 (+) True G162110
CI01000030_08168074_08174577.mRNA mRNA upstream 95412 8167927 ~ 8174662 (+) False CI01000030_08168074_08174577
CI01000030_08159242_08166884.mRNA mRNA upstream 103129 8159242 ~ 8166945 (+) True CI01000030_08159242_08166884
CI01000030_08155452_08158318.mRNA mRNA upstream 111365 8155452 ~ 8158709 (+) False CI01000030_08155452_08158318
CI01000030_08150901_08154024.mRNA mRNA upstream 116050 8150901 ~ 8154024 (+) True CI01000030_08150901_08154024
CI01000030_08133065_08140755.mRNA mRNA upstream 129076 8133065 ~ 8140998 (+) True CI01000030_08133065_08140755
CI01000030_08555726_08559327.mRNA mRNA downstream 284965 8555379 ~ 8559397 (+) False CI01000030_08555726_08559327
CI01000030_08763819_08775586.mRNA mRNA downstream 493316 8763730 ~ 8775772 (+) True CI01000030_08763819_08775586
CI01000030_08837486_08838040.mRNA mRNA downstream 566807 8837221 ~ 8838451 (+) True CI01000030_08837486_08838040
CI01000030_08845484_08861801.mRNA mRNA downstream 575070 8845484 ~ 8861801 (+) True CI01000030_08845484_08861801
CI01000030_08862264_08875155.mRNA mRNA downstream 591850 8862264 ~ 8875155 (+) True CI01000030_08862264_08875155
TU184054 other upstream 30470 8237965 ~ 8239604 (+) True G162088
TU183810 other upstream 397302 7854085 ~ 7859348 (+) True G161901
TU183621 other upstream 1067589 7199935 ~ 7200017 (+) True G161721
TU181432 other upstream 3752967 4516778 ~ 4517107 (+) False G159816
TU181300 other upstream 3781548 4431800 ~ 4488526 (+) True G159685
TU183922 other downstream 274168 8544582 ~ 8548325 (+) True G161986
TU184111 other downstream 297596 8568010 ~ 8571726 (+) True G162137
TU184486 other downstream 1085989 9356403 ~ 9357014 (+) False G162449
TU184485 other downstream 1086145 9356559 ~ 9357014 (+) False G162449
TU184353 other downstream 1772379 10042793 ~ 10042887 (+) True G162323

Expression Profile