RNA id: TU184175



Basic Information


Item Value
RNA id TU184175
length 1126
lncRNA type read_through
GC content 0.52
exon number 8
gene id G162186
representative False

Chromosome Information


Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 8865175 ~ 8930522 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTGATGAGCCGAATGGTAAATGGAGGACGTTTGTCTTTCATCTTCTCATCTTTCATCTTCTCAGTTTTCTTCCGCTTATCCAATGATGCTACTAATCCAGCTGCTGTAGGCAGACACACGAGTGAAGACTGTTGGCTTCTGGTAGGTATTGCAACCCAATGATGACACAAAGCTGGTCACCATGGACGACGTACTGACCGCTCACCTGGCAGTTCAGAGGACCACCAGAGTCCATTGCATCCAGACAAGCTGCCGCCACCAGCGCACACCATGGTGTTCTTCACGGTGCTTCCCCACCAGTCGCTACGAGAGCAGGTACTGTAGTCCACCACGGGCAGGTAGGCCTGTTTCAGCTGAGCAGAGAGCGACCCACCAGCTGCACGAGAGACAGGAATCATCAGTACATGCAAATGATTTCAGGAAACATCAAAGCTATTTGAAGTTAAACTGACTCTGAGTGCGGCCCCAGCCGGTGATGTAACAGACGTTGTTGTGGGGCAGAACCTGTCCAGAGGGTGGAAGGGTGGCCAGCTTCACATATGAGTTCAGAGTGGCTTCAGAGGACAGACGCAGAAGAGCAATATCATATCCAGCAGCCACACTGTTGCTGTTCCAGCCGGAGTGGATGTACACTTGACTGACGCTCATGTACTGCTCGCGACCTTCATGGGTGTAGATGTCATGGTCGCCCAGGACAACACGCCAAGTCCTCGAGGTGTCAACGCAGTGGGCGGCGGTCAACACCCAATTCCTTCTGATCAGAGTCCCACCACAGGTGTGATAGTAGCTGCCGCCAGACAGATACTGGAGAGAGATCTGCCAGGGCCAGGAGTTGGGACTTGCCACCTCTCCACCCACAACCCTCTCCTCAATGGCCTGATCCTCTAAATATCTAGGCTCAGCCAGCGCCAGGGCGGCCAGCACACTCAACAACAAGATCCTCAGCATGTTTGCAGTCTGTCTGGTCTTTCTGCGCTCTTCCATCATCCATATATATGCCCGCAGAAGTTCACAGCGCTGTACAGAACAGGTGTTTGACTCACAGCTGATGCCCACAGGTGTGTGAATCCCACAGATATCATCACTGCCAAGGCCAATGTCCCAGTTGCAGAATAAACTTGTTTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU184244 lncRNA upstream 53720 8809324 ~ 8811455 (+) True G162236
TU184240 lncRNA upstream 57998 8806668 ~ 8807177 (+) True G162233
TU184239 lncRNA upstream 59217 8805494 ~ 8805958 (+) True G162232
TU184185 lncRNA upstream 61383 8801247 ~ 8803792 (+) True G162192
TU184237 lncRNA upstream 64610 8800276 ~ 8800565 (+) True G162230
TU184266 lncRNA downstream 19113 8946122 ~ 8946337 (+) True G162254
TU184267 lncRNA downstream 19549 8946558 ~ 8947698 (+) True G162255
TU184268 lncRNA downstream 20849 8947858 ~ 8948340 (+) True G162256
TU184269 lncRNA downstream 22455 8949464 ~ 8949693 (+) True G162257
TU184195 lncRNA downstream 104868 9031877 ~ 9039588 (+) True G162202
CI01000030_08845484_08861801.mRNA mRNA upstream 3374 8845484 ~ 8861801 (+) True CI01000030_08845484_08861801
CI01000030_08837486_08838040.mRNA mRNA upstream 26724 8837221 ~ 8838451 (+) True CI01000030_08837486_08838040
CI01000030_08763819_08775586.mRNA mRNA upstream 89403 8763730 ~ 8775772 (+) True CI01000030_08763819_08775586
CI01000030_08555726_08559327.mRNA mRNA upstream 305778 8555379 ~ 8559397 (+) False CI01000030_08555726_08559327
CI01000030_08168074_08174577.mRNA mRNA upstream 690513 8167927 ~ 8174662 (+) False CI01000030_08168074_08174577
CI01000030_08951137_08953545.mRNA mRNA downstream 22969 8949978 ~ 8953663 (+) True CI01000030_08951137_08953545
CI01000030_08970358_08975052.mRNA mRNA downstream 42383 8969392 ~ 8975093 (+) True CI01000030_08970358_08975052
CI01000030_09065536_09066102.mRNA mRNA downstream 138129 9065138 ~ 9066149 (+) True CI01000030_09065536_09066102
CI01000030_09086896_09146359.mRNA mRNA downstream 159887 9086896 ~ 9146359 (+) True CI01000030_09086896_09146359
CI01000030_09158208_09166948.mRNA mRNA downstream 231199 9158208 ~ 9168173 (+) True CI01000030_09158208_09166948
TU184111 other upstream 293449 8568010 ~ 8571726 (+) True G162137
TU183922 other upstream 316850 8544582 ~ 8548325 (+) True G161986
TU184054 other upstream 625571 8237965 ~ 8239604 (+) True G162088
TU183810 other upstream 992403 7854085 ~ 7859348 (+) True G161901
TU183621 other upstream 1662690 7199935 ~ 7200017 (+) True G161721
TU184486 other downstream 429394 9356403 ~ 9357014 (+) False G162449
TU184485 other downstream 429550 9356559 ~ 9357014 (+) False G162449
TU184353 other downstream 1115784 10042793 ~ 10042887 (+) True G162323
TU184321 other downstream 1206290 10133299 ~ 10133763 (+) True G162297
TU184320 other downstream 1220255 10221095 ~ 10221224 (+) True G162297

Expression Profile