RNA id: TU184503


Basic Information

Item Value
RNA id TU184503
length 325
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id G162463
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 9417532 ~ 9417856 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCACATGTGTGACAGAGGTGAGTGATGTCCAGATGTTGAGTCTGGTTGCTGATGGGATTGTTCAGCACACAGCTGTAGGTGTTTTTATCCTGATATTCCACCTCCAGAGGTAGAGAGAGACTGATGCTGAGATCAGACACACTGATGCTGGACAATAAACTGTTTCCTTTGTACCAGGAGAGAGTCACATGACTCACATTCACAGCTGAACACAACAATGAACAATTTGAAGATAATGATGAAGAAGAACATTGTGAAGAGTTACTGCTGATGACAGGAACAGGCAGACGAGCTGAGAAACATGAGAGAATAAACTGAAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184500 lncRNA upstream 11888 9405405 ~ 9405644 (+) True G162460
TU184499 lncRNA upstream 15469 9401850 ~ 9402063 (+) True G162459
TU184493 lncRNA upstream 28165 9389140 ~ 9389367 (+) True G162454
TU184491 lncRNA upstream 35026 9382278 ~ 9382506 (+) True G162452
TU184487 lncRNA upstream 60518 9356758 ~ 9357014 (+) True G162449
TU184505 lncRNA downstream 2073 9419929 ~ 9420133 (+) True G162465
TU184509 lncRNA downstream 21936 9439792 ~ 9440117 (+) True G162469
TU184514 lncRNA downstream 46374 9464230 ~ 9467396 (+) True G162474
TU184531 lncRNA downstream 68610 9486466 ~ 9487179 (+) True G162483
TU184533 lncRNA downstream 69691 9487547 ~ 9488043 (+) True G162484
CI01000030_09361364_09379014.mRNA mRNA upstream 37811 9361035 ~ 9379721 (+) True CI01000030_09361364_09379014
CI01000030_09321409_09339033.mRNA mRNA upstream 77568 9321340 ~ 9339964 (+) False CI01000030_09321409_09339033
CI01000030_09308467_09315467.mRNA mRNA upstream 101472 9307812 ~ 9316060 (+) True CI01000030_09308467_09315467
CI01000030_09300172_09306760.mRNA mRNA upstream 110158 9299805 ~ 9307374 (+) True CI01000030_09300172_09306760
CI01000030_09259092_09261043.mRNA mRNA upstream 156489 9258216 ~ 9261043 (+) True CI01000030_09259092_09261043
CI01000030_09509234_09514703.mRNA mRNA downstream 90733 9508589 ~ 9516002 (+) True CI01000030_09509234_09514703
CI01000030_09526436_09552770.mRNA mRNA downstream 108399 9526255 ~ 9554552 (+) False CI01000030_09526436_09552770
CI01000030_09598376_09634083.mRNA mRNA downstream 180298 9598154 ~ 9634480 (+) True CI01000030_09598376_09634083
CI01000030_09691687_09697272.mRNA mRNA downstream 272940 9690796 ~ 9697492 (+) True CI01000030_09691687_09697272
CI01000030_09724422_09740444.mRNA mRNA downstream 306499 9724355 ~ 9740578 (+) False CI01000030_09724422_09740444
TU184486 other upstream 60518 9356403 ~ 9357014 (+) False G162449
TU184485 other upstream 60518 9356559 ~ 9357014 (+) False G162449
TU184111 other upstream 845806 8568010 ~ 8571726 (+) True G162137
TU183922 other upstream 869207 8544582 ~ 8548325 (+) True G161986
TU184054 other upstream 1177928 8237965 ~ 8239604 (+) True G162088
TU184353 other downstream 624937 10042793 ~ 10042887 (+) True G162323
TU184321 other downstream 715443 10133299 ~ 10133763 (+) True G162297
TU184320 other downstream 729408 10221095 ~ 10221224 (+) True G162297
TU184331 other downstream 1073590 10491446 ~ 10491607 (+) True G162303
TU184890 other downstream 1320725 10738581 ~ 10740551 (+) True CI01000030_10738658_10751094

Expression Profile