RNA id: TU184711


Basic Information

Item Value
RNA id TU184711
length 403
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G162633
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10228644 ~ 10238283 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCTTAATGTGCCAGGCCAAATCCGCACATCCAAAGCCTAGCTAAATCTGGCAACCATTACTGGGCCAGAGCTGTCAGAACACAGTGAGCCGACACCGACGCGCTAATACCTGGTAGTGTTGCAACATGTAGGGAGTCACCCGGCTCATCACTACAACTGCGTCTCCAGTAAAGCAGAACAACAACACTTTTATTTGGAGTGTTGAGTGTTGAAAATGAAGCTTCTCTTTAATTTGCTCGCGGTGATCTTGTTTTTACTCGACCAGGGTGTTACTGCTGCTGAGCTAGAACACATCGAGTGAGAAAAGGGAGAAACTGTCACTTTACATACTGGTGTAATAAGAAAACCAAGTGATGTGATCATCTGGTATTTTAATGACAATGTTGTTACTCCCACGAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184713 lncRNA upstream 4486 10228644 ~ 10231531 (+) False G162633
TU184720 lncRNA upstream 40816 10194097 ~ 10195201 (+) True G162634
TU184364 lncRNA upstream 104446 10115690 ~ 10131571 (+) True G162334
TU184380 lncRNA upstream 140422 10087916 ~ 10095595 (+) True G162350
TU184659 lncRNA upstream 154557 10017898 ~ 10081460 (+) True G162583
TU184737 lncRNA downstream 46380 10284663 ~ 10299194 (+) True G162650
TU184385 lncRNA downstream 59390 10297673 ~ 10490876 (+) True G162355
TU184349 lncRNA downstream 76856 10315139 ~ 10316965 (+) True G162319
TU184438 lncRNA downstream 105998 10344281 ~ 10354263 (+) True G162408
TU184749 lncRNA downstream 118820 10357103 ~ 10372898 (+) True G162661
CI01000030_10199403_10226165.mRNA mRNA upstream 9137 10199111 ~ 10226880 (+) True CI01000030_10199403_10226165
CI01000030_10178017_10185588.mRNA mRNA upstream 47898 10175476 ~ 10188119 (+) True CI01000030_10178017_10185588
CI01000030_10164557_10167430.mRNA mRNA upstream 66635 10164364 ~ 10169382 (+) True CI01000030_10164557_10167430
CI01000030_10148536_10153337.mRNA mRNA upstream 82578 10147217 ~ 10153439 (+) False CI01000030_10148536_10153337
CI01000030_10140982_10145096.mRNA mRNA upstream 90828 10139883 ~ 10145189 (+) True CI01000030_10140982_10145096
CI01000030_10246173_10256836.mRNA mRNA downstream 6127 10244410 ~ 10256912 (+) True CI01000030_10246173_10256836
CI01000030_10259762_10274068.mRNA mRNA downstream 21431 10259714 ~ 10274169 (+) True CI01000030_10259762_10274068
CI01000030_10304328_10313568.mRNA mRNA downstream 66045 10304328 ~ 10313627 (+) True CI01000030_10304328_10313568
CI01000030_10333687_10335629.mRNA mRNA downstream 95235 10333518 ~ 10335792 (+) True CI01000030_10333687_10335629
CI01000030_10422761_10426202.mRNA mRNA downstream 184369 10422652 ~ 10426252 (+) True CI01000030_10422761_10426202
TU184320 other upstream 14793 10221095 ~ 10221224 (+) True G162297
TU184321 other upstream 100458 10133299 ~ 10133763 (+) True G162297
TU184353 other upstream 190134 10042793 ~ 10042887 (+) True G162323
TU184486 other upstream 879003 9356403 ~ 9357014 (+) False G162449
TU184331 other downstream 253163 10491446 ~ 10491607 (+) True G162303
TU184890 other downstream 500298 10738581 ~ 10740551 (+) True CI01000030_10738658_10751094
TU184924 other downstream 627729 10866012 ~ 10868440 (+) True G162821
TU184823 other downstream 1102472 11340755 ~ 11340925 (+) True G162730
TU185083 other downstream 1254318 11492601 ~ 11496119 (+) True G162951

Expression Profile