RNA id: TU184385


Basic Information

Item Value
RNA id TU184385
length 269
lncRNA type read_through
GC content 0.36
exon number 2
gene id G162355
representative True

Chromosome Information

Item Value
chromosome id CI01000030
NCBI id null
chromosome length 11638347
location 10297673 ~ 10490876 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGCTACAACAGCCCAAACAAAATCTAATATTAAAAAGTCAAGGGTCAAGAGCCCAACTAAAGCAAACTCTGATCTCTGTGATGGTTTCTTAAAAATTGTGATTTTCTCCTTTGGTGATTCTGCTTGTTATCATCAGGTGTCTTCAATAATGGTCAATCATCACTCAATTAAACACTTAATTATCTCATTAACTTTAACACTGCTTCAGTGGGTGGAATAAAAATATGGCAGGACTTTTACTTTCTGACCCCTGGAATGTCCACCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184711 lncRNA upstream 59390 10236017 ~ 10238283 (+) True G162633
TU184710 lncRNA upstream 60019 10237126 ~ 10237654 (+) True G162632
TU184713 lncRNA upstream 66142 10228644 ~ 10231531 (+) False G162633
TU184720 lncRNA upstream 102472 10194097 ~ 10195201 (+) True G162634
TU184364 lncRNA upstream 166102 10115690 ~ 10131571 (+) True G162334
TU184338 lncRNA downstream 14563 10505439 ~ 10511059 (+) False CI01000030_10473378_10509560
TU184337 lncRNA downstream 16695 10507571 ~ 10511059 (+) True CI01000030_10473378_10509560
TU184396 lncRNA downstream 23012 10513888 ~ 10515816 (+) True G162366
TU184784 lncRNA downstream 31428 10522304 ~ 10533874 (+) False G162694
TU184785 lncRNA downstream 31428 10522304 ~ 10564317 (+) False G162694
CI01000030_10259762_10274068.mRNA mRNA upstream 23504 10259714 ~ 10274169 (+) True CI01000030_10259762_10274068
CI01000030_10246173_10256836.mRNA mRNA upstream 40761 10244410 ~ 10256912 (+) True CI01000030_10246173_10256836
CI01000030_10199403_10226165.mRNA mRNA upstream 70793 10199111 ~ 10226880 (+) True CI01000030_10199403_10226165
CI01000030_10178017_10185588.mRNA mRNA upstream 109554 10175476 ~ 10188119 (+) True CI01000030_10178017_10185588
CI01000030_10164557_10167430.mRNA mRNA upstream 128291 10164364 ~ 10169382 (+) True CI01000030_10164557_10167430
CI01000030_10537146_10539791.mRNA mRNA downstream 45315 10536191 ~ 10540258 (+) False CI01000030_10537146_10539791
CI01000030_10540503_10543066.mRNA mRNA downstream 49420 10540296 ~ 10543215 (+) True CI01000030_10540503_10543066
CI01000030_10567314_10570556.mRNA mRNA downstream 73518 10564394 ~ 10570573 (+) True CI01000030_10567314_10570556
CI01000030_10581114_10588932.mRNA mRNA downstream 89737 10580613 ~ 10589621 (+) True CI01000030_10581114_10588932
CI01000030_10596446_10602032.mRNA mRNA downstream 105341 10596217 ~ 10603637 (+) True CI01000030_10596446_10602032
TU184320 other upstream 76449 10221095 ~ 10221224 (+) True G162297
TU184321 other upstream 162114 10133299 ~ 10133763 (+) True G162297
TU184353 other upstream 251790 10042793 ~ 10042887 (+) True G162323
TU184486 other upstream 940659 9356403 ~ 9357014 (+) False G162449
TU184331 other downstream 570 10491446 ~ 10491607 (+) True G162303
TU184890 other downstream 247705 10738581 ~ 10740551 (+) True CI01000030_10738658_10751094
TU184924 other downstream 375136 10866012 ~ 10868440 (+) True G162821
TU184823 other downstream 849879 11340755 ~ 11340925 (+) True G162730
TU185083 other downstream 1001725 11492601 ~ 11496119 (+) True G162951

Expression Profile