RNA id: TCONS_00000126


Basic Information

Item Value
RNA id TCONS_00000126
length 2939
RNA type mRNA
GC content 0.50
exon number 20
gene id XLOC_000066
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6135176 ~ 6158609 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGATGGAGTTGTACGGCGTGAGTTTATGACGTTTTGAATGAGCAGACGTTTTGAATGATTTAACATCGCTGGAATAATCATAATTCATCTGAAGGGATAGTTATTGAAGGACGCACTCGAAAGACTTGAAGGTGACGCTGGAAACAGATATTCTTCGTGTGGatccatcatcatcttcatcatggTGGAGATGAAGAGTTTCTGTGAGGCTGGCGTCTCCATGCAGCAGGTCTGGGTGGAGGGCGGCCTGACTCTGTGTTTCTACTTCACCCTGGTGCCATCCGTCCTCCtcaccctcctcttcctcttcgGCACACTGCTGTGTATTTGGTACAGCCGCTATGGCACAGACATGGAGCCCAAATTCGTCCCCCGCTCTGGACTGTACCGGCTGCAGGTGGGGCTGTCGGTGCTACTGATCCTGCAGGCTCTGGGCTGGATGGTGTTTCGGCTGAGCTGGAGCGCGGAGCTGCCGGGATATGTGGTTTTGTATGGATGTCTCTCCATGCTGGGCTGGATTTGGGCTGTAGTTTTGCTGCGTCTGGAGAGAAGGAAGGTTCTGGTGCGGGACAGAACCAGAGGACACAGTACTGTACTGTTGCTGTACTGGGCAGTAGCTTTCGCAGCCGATAATCTGGCATTTGTGTCCTGGATGAGCCCTCAGTGGTGGTGGAGTCTGGAGACGTCCGAGCAACAGATGGAGTTTGCATTCTGGCTGGTGCGATACTTCTGCTCAGGTTTGCTGTTCCTGTTAGGCCTCAAAGCTCCAGGTTTGCCCCGCCGGCCGTACATGCTTCTGGTCAATGAAGACGAGCGAGACGTGGAGCATGGAGCGCCCCTGTTGGGTAATTCTGATGAGGATCAGTCTACATGGAAAGACTTTGGCAAGAAGGTGCGTTTGTTGGTGCCATACATGTGGCCTAAAGGAAGTGTCCTGCTCCAGCTGCTGGTTCTGATGTGTCTCGGGATGCTGGGAATCGAGCGCGCCATCAATGTGTTTGTGCCCATCTACTACAAGAACATAGTGAACCAGCTGACAGACGGGAGCTCCTGGAAGACTCTGGCCATGACGGTGTGTGTTTATTGTCTCCTGAAGTTCCTGCAGGGAGGTGGAGCTGGTGCGTCTGGGTTTGTGAGTAACTTGCGTTCGTTCCTGTGGATTCGCGTGCAGCAGTACACTAACCGCGTGGTGCAGGTGCGGCTCTTCGCTCATCTGCATGCTCTATCTCTGCGCTGGCATCTGGGCCGCCGGACAGGAGACGTCCTGAGGAGCATCGACAGAGGAACATCCTCCATCAACAGCCTGCTCAGCTACATCGTGTTCAGCATCTTCCCCACCATCGCTGACATTGTCATCGCCATCGTCTATTTCATATCCAATTTCAATGCCTGGTTTGGCCTTATAGTCTTTGTATGCATGGCTCTCTACCTCACTCTCACCATCTTTATCACTGAATGGAGAACCAAATACAGGCGTGATATGAACACACAAGATAACAACGCCAAATCCAAAGCTGTGGATTCTTTATTGAACTTTGAGACGGTGAAATATTACAATGCAGAAAGTTACGAAGTGGGCCGCTTTGAGGACGCCATCCTGAAATACCAGGTATCGGAGTGGAAGACCAATGCATCTCTGGCGCTCTTAAATCAAACACAGAACCTCATCATTGGTTTGGGTTTGCTGACTGGATCTCTGCTTTGTGCGTATTTTGTGACTGAGGGAAAATTTCAGGTTGGAGATTATGTGCTGTTTGGAACGTACATCATCCAGCTCTACACTCCTCTCAACTGGTTTGGAACTTACTACCGAATGATCCAGAACTCCTTCATCGATATGGAAAGCATGTTCAAGCTCTTCACCGAGGAAGAAGAGGTGAAGGATGAAGTCAATGCAGGAAACCTTTATTTCAGACAGGGGAAAGTAGAGTTTGAGAACGTCTTCTTCAGCTACACACAAGGCAAGGAGATTCTGAAAGATGTCTCTTTTACCGTTCTCCCAGGACAAACAGTTGCTCTTGTGGGTCAGTCTGGATCAGGAAAAAGCACCATCATCCGTCTGCTCTTCCGCTTTTATGATGTTCAAGGCGGGTGTATAAAGATCGATGGCCAAGACATCTCAAAGGTGAAGCAGTCGTCTCTGCGCGCTCACATCGGTGTTGTCCCTCAGGACACGGTCCTGTTTAATGACAACATTCGAGACAACATCCGCTACGGTCGAGTCACGGCCACTGACCAGGAAGTGGAGGAAGCTGCAATCGCCGCCGACATCCATGACAAAATCATAGGCTTTCCAGATGGCTATGAGACTCAGGTGGGTGAGAGAGGGCTGAAGCTAAGCGGAGGAGAAAAGCAGAGAGTCGCCATCGCTCGCACCATCCTTAAAGCACCGCAAATCATCCTGCTGGATGAGGCCACATCTGCTCTAGACACTCAGACTGAGCGAAACATTCAGGCCTCGCTGGCTAAAGTCTGCGCCAACAGAACCACAGTTGTTGTGGCACACAGATTGTCAACTATCATCGGAGCTGACGTGATTCTTGTTCTTCGTGATGGCCAGATTGTGGAGAGAGGAAGGGCATGAAGAGCTGCTGGCAAAGGGCGGCCTTTACTCTGACATGTGGCAGAAACAGCAGCAGGCGCAGGATTCAGACTCAGCTTCTGACTCGGAGACTAAAGACAGAAAATCGGAGAAACTACAGCCACAGACATCCACTACAGCACACAGGGGACACTAGACATAAGGGAATCGCAATATACGCCGGTATTATGTGCATTTTTAAGCTCAAATAGTGCTGTTTAGGCATGTCCGATTTTtaattgttagatttttttttggtttgctgccagtttttaaagggatagttcacccaaactgaAAACtctttcatcatttatttacactTCACGTCTCACAAACATGTCTGAGTTTCTTTTCT

Function

GO:

id name namespace
GO:0097325 melanocyte proliferation biological_process
GO:0015886 heme transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0061072 iris morphogenesis biological_process
GO:0005774 vacuolar membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016887 ATPase activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function
GO:0020037 heme binding molecular_function
GO:0015439 ATPase-coupled heme transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050517-9 Predicted to enable ABC-type heme transporter activity and heme binding activity. Acts upstream of or within iris morphogenesis and melanocyte proliferation. Predicted to be located in membrane. Predicted to be active in vacuolar membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in dyschromatosis universalis hereditaria. Orthologous to human ABCB6 (ATP binding cassette subfamily B member 6 (Langereis blood group)).

Ensembl:

ensembl_id ENSDART00000179970

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003020 lncRNA upstream 336096 5795013 ~ 5799092 (+) False XLOC_000065
TCONS_00003021 lncRNA upstream 336096 5795035 ~ 5799092 (+) True XLOC_000065
TCONS_00003019 lncRNA upstream 406504 5706970 ~ 5728684 (+) True XLOC_000064
TCONS_00003018 lncRNA upstream 821593 5311479 ~ 5313595 (+) False XLOC_000059
TCONS_00000128 lncRNA downstream 3404 6162013 ~ 6166554 (+) False XLOC_000067
TCONS_00000131 lncRNA downstream 13234 6171843 ~ 6177337 (+) False XLOC_000067
TCONS_00000133 lncRNA downstream 14875 6173484 ~ 6179556 (+) False XLOC_000067
TCONS_00000135 lncRNA downstream 23735 6182344 ~ 6185532 (+) True XLOC_000067
TCONS_00000137 lncRNA downstream 31388 6189997 ~ 6196763 (+) False XLOC_000068
TCONS_00000124 mRNA upstream 547613 5576151 ~ 5587575 (+) True XLOC_000063
TCONS_00000122 mRNA upstream 631058 5485799 ~ 5504130 (+) False XLOC_000062
TCONS_00000118 mRNA upstream 700927 5422439 ~ 5434261 (+) False XLOC_000061
TCONS_00000119 mRNA upstream 708482 5422576 ~ 5426706 (+) True XLOC_000061
TCONS_00000116 mRNA upstream 716072 5402476 ~ 5419116 (+) False XLOC_000060
TCONS_00000127 mRNA downstream 3321 6161930 ~ 6169817 (+) False XLOC_000067
TCONS_00000129 mRNA downstream 3481 6162090 ~ 6172328 (+) False XLOC_000067
TCONS_00000130 mRNA downstream 12976 6171585 ~ 6182518 (+) False XLOC_000067
TCONS_00000132 mRNA downstream 14177 6172786 ~ 6183228 (+) False XLOC_000067
TCONS_00000136 mRNA downstream 31340 6189949 ~ 6210718 (+) False XLOC_000068
TCONS_00000123 other upstream 633104 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000120 other upstream 648026 5437390 ~ 5487162 (+) False XLOC_000062
TCONS_00000121 other upstream 684744 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000117 other upstream 716681 5402534 ~ 5418507 (+) True XLOC_000060
TCONS_00000111 other upstream 2375154 3759924 ~ 3760034 (+) True XLOC_000054
TCONS_00000134 other downstream 23733 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000149 other downstream 629081 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000154 other downstream 905228 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000208 other downstream 2995485 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 2996384 9154993 ~ 9155521 (+) False XLOC_000113

Expression Profile

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