RNA id: TCONS_00001250


Basic Information

Item Value
RNA id TCONS_00001250
length 3625
RNA type mRNA
GC content 0.43
exon number 16
gene id XLOC_000763
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 55730205 ~ 55747003 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGCAACAAACAGTAGGAGTATTCAGTCTAGTAGGAGAAGATCACTGAGTGTAAACGCAGATCAGATAAAGTGAAATACACTGGAACGTCAAAACTGACCATGGGCTTTTGTGGAGGCTTTATAAAAGTTCAGACTGTCTTGTCTATTGTGCTGTGTATTGCATTGGAGCAGCTTTTACCCAGTGCTAGTCTGACTGACCCCTGCAACAACTACACTGTGCTGAACGATTCATGGAGACACATTGGTAATTCACAACCCCCCATCATGTGTGATGCCTCAGTCTCCTGGAGCGGCTGGTATCGGCTCTTCATTAACGGTCTGAGCGCTCATATCCCAGACACATGTGTTGAGGTCTATAGCTGTGGCACTGCTGCCCCACTGTGGATTAGTGGTGGACACCCAGCAGTAGAGGATGGAGTCGTCACTCGAAATGTCTGCAGTCACTGGTGCGGGGACTGCTGCCTTAACGGCTCTTTTTCCATTCAAGTCAAAGCTTGTCCTGGAAATTATTCTGTCTATGAACTGATTAGTCCCTTAATTTGCTCAGCCTACTGTGCAGATGTACATACAACACTGGAGGAAGCATGCACAGATTGGACTGCTAAAGATTGTCTTGTAAACATTCTTGAGCTGATAGAGAACATCACGGTTCAAGTGCTTCCTTTAAATACAGTGACCAACTATTTAGACATGGTCCTTGAAGCCACAGAGAAGTTTTTAGTGTCTTCATCGTCAGACAGCCCGGCTGAACTGGCCTCATATGGAAACCGTGTGCTGGAATCCACTGAGAAACTCATCTCTACACTGGTGAAGCTGACAGACACAAGTGCCAATGTCAGTTTTACTCTGGAGAATGTAGAGGGACACGTTTTCATGGTTGGaccaaatgtcactttaaatgaaATCCTTCAACTAAACACAACTAATTCATTTATGGACATTGATCTTATTGGCATTGCCAAGAACAACAAGGACACACGATCTGCTGCTGTGGCTTTCATGAGCTACACTATAATGGAGAATCTACTGAAGGCCGACTTcttcaacacacaaaaaaacacaaataaaaccatGATGTCCACTGTGATCTCAGCTACTCTTCCCAAAACCAGCAACACTGCACTCACCAAACCAGTCAACTTCACCTTCAGACACATCAGAGAGTTTGACCCCAGCGGTTCTCTGTCCTGTGTGTACTGGAATATCAGCGAGTGGATTGTAGATGGTTGTTCTGTGTTAAACAGCAACAGCAGCCACACTGTGTGTTCCTGTGTTCATCTGTCCACATTCGCTCTCATCATGCAGACCAGCAGCAGTCCACCACCGAGCGATCTGCTGGATCTGCTGAATCTGGTGTGTGTGATCGTGGGTCTGGTGTTCTTCAGTTTGGCTCTGTTGTCCTTTGCTCTTTGTCAGTGGAGTCCTGGAGTCAATAATGTGGCTCGAATCAACATCTGCATCAGTCTGCTGTCGGCTCACCTTCTGTTGCTGCTCACACAACAGTTCCTGAGCCTCATTCGCCCTCAGCAGGTGTTGTGTGTGGTGATAGCAGGCCTTCTGCACTTCCTCTTCCTCTCCGCCTTTGTGTGGATGTTCATTGAAGCTGTGCTGCTCTTCATCTGCGTCAAGAACCTATCACAGGTCAGCTCCAGAAAGAAGGAGGTGCTTAGCAATGGATTTCTGTGTGTGATTGGATATGTGGTTGCTTTGATTGGGGTGAGTGTGTCTATTGGGATGGTTCCAGAAGGATACGGCAGTGAACAATGCTGGATTAAAATGGATAAAGGCTTCTTCTGGAGTTTTTTGGGACCTGTTTGCGTCATACTTGGATTGAACGTGATTCTCTTCATCAGCATCAGCATCTATCTGAACTCGGCACTCAAAAAGCTGAACGCTGAAGTTTCACAGTTGAAACAAACCAAGGTTATGGTGTTTAAAACACTGGGTCAGTTTGTGATTCTTGGTTGCCCTTGGATTCTGGGTTTCTTCGCTCATGTCAATATGGTGGTGGAGATCGTCTTCATCATCATAAACTCTCAGCAGGGAACCTTCATCTTCCTGATCTACTGTGTGCTCAGTACTGAGATCAGGCAGCAGTACAAGAAGATCTTCACATGTCTGTGCTGTGGATGCAAAACCAACAACGTAAACACGGCCCTCAAAACACGCTGAGGATTACACTTCAGGTTTAGACAATCAAGTgccattttaacattatttacacATTAAACATGATGAATGTGACTTTCATTATTTAACATCTTGCACTGTGCTTATtttacaaataacatttatttaaaatgctttataaatgtaaCTTCAACTCATGTTttcttataaacattttatttaaaaccctTTACAAAAATACCCCAAACCTCAACATTCACACAATCCAAGAAGGAAAGAAAAGCATCTGTGTAGTGATTAGTGAATCAACATGTTTCACAGTCACAATTCATATCATCACTTACATGTATGTAAACTAACATTTTCCATCTTCTTTGgtattgttttattgaaaaataaaatctacTCATAAATTTGTGGCttagctgactttttttttaacatgccAACCACGTAACCTCTACATCAAGTGTGTTTTTTATGTACTTGACGTAGGATTATTCAAGTAGGAATCACCTCGGGCCACCATTACACTGGAAACGACTTAACAGTGGCATCTCTCACAGTCCCATTACACCATATTATAGGAAAAAAGTACAGGGTGCTTTCACAGAAAGACTTCCCTGAGGTGTCCAAAAGGTCCAAAGTGCTGAAGAGAAACCACATCACTGTTCTCTTGCACATCATAGCATCTCCATATCTAAAacagtgcacaaaaaaaaaactggaacagCTGGAAACCTTCTGCTGGACTAGACCCTAAAGaaatattgcaccaaaataaacATGACTTAGAAGCATAAACAAGTCTAGTCCAGCAACGTTTCAGTCCATGTAGTCTCTTATCGGCTGAACATTACAGGAAAAACAGCTCTTTAAATAACGCAGCTCAAGAGAGCTCAGATATTTAAACACTATGAAACAAAACATGGCAATGGTAGTGACTCCAGCTTTATAGTACATGCAGCTCAAGAAGCTGGCAAAACATTTGCAATAGTGTCCTTGGCATTCTGGGAGAGCTTTTCTGGAAACCTGACCTCGTACTCAACAACCAAGTCTCCGCGGCGATCTGGAGCTTTGGGAAGAGGAAGACCTTCCCCGGTGAGGCGCCGCTTCATCCCAGGCCGAACAATGTCCTGAGATGTTACTTTAACCGTGCGACCATCTAGCGTTGGAACGTTAATCACACAACCACAAAGAGCCTGAGAAGAGTGGAGAAGAAAGACTTTAGTAAAATGCAAGGTAAATGAATTATTTCTACGCGATTTTCAGAATTCAAAAACATTACGGCTGAGCAACATCAAAATTGGCAATTGTAAATTTAATATACAGATTGCAGTGATTTGAGATAAATTAgtgatttaaaacaaacaaatctttGAGCGTCCGCCACTAGCACACTGTCTGAAATAATTTTTAGCACTTCAGGAAATGTATTTACTAGAGACGCAtgggcatgggacgataacgGTTTTGAGAtgtactgtggtttgg

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0007166 cell surface receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090313-152 Predicted to enable G protein-coupled receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in kidney; liver; muscle; ovary; and testis. Orthologous to human ADGRE1 (adhesion G protein-coupled receptor E1).

Ensembl:

ensembl_id ENSDART00000148075

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003235 lncRNA upstream 1079 55714918 ~ 55729126 (+) True XLOC_000760
TCONS_00003236 lncRNA upstream 8790 55717578 ~ 55721415 (+) True XLOC_000761
TCONS_00003234 lncRNA upstream 50758 55678912 ~ 55679447 (+) True XLOC_000758
TCONS_00003233 lncRNA upstream 62845 55666862 ~ 55667360 (+) True XLOC_000757
TCONS_00003231 lncRNA upstream 253070 55456363 ~ 55477135 (+) False XLOC_000745
TCONS_00003237 lncRNA downstream 669635 56416638 ~ 56556305 (+) True XLOC_000768
TCONS_00003238 lncRNA downstream 814223 56561226 ~ 56604170 (+) False XLOC_000772
TCONS_00003239 lncRNA downstream 814250 56561253 ~ 56604352 (+) True XLOC_000772
TCONS_00003240 lncRNA downstream 815824 56562827 ~ 56564352 (+) True XLOC_000773
TCONS_00003241 lncRNA downstream 822511 56569514 ~ 56603810 (+) True XLOC_000774
TCONS_00001249 mRNA upstream 1747 55723870 ~ 55728458 (+) True XLOC_000762
TCONS_00001248 mRNA upstream 22869 55703120 ~ 55707336 (+) True XLOC_000759
TCONS_00001247 mRNA upstream 61815 55662491 ~ 55668390 (+) False XLOC_000757
TCONS_00001246 mRNA upstream 83792 55643198 ~ 55646413 (+) True XLOC_000756
TCONS_00001245 mRNA upstream 113050 55608520 ~ 55617155 (+) True XLOC_000755
TCONS_00001251 mRNA downstream 5590 55752593 ~ 55777154 (+) False XLOC_000764
TCONS_00001252 mRNA downstream 5682 55752685 ~ 55776610 (+) False XLOC_000764
TCONS_00001253 mRNA downstream 8301 55755304 ~ 55773658 (+) False XLOC_000764
TCONS_00001254 mRNA downstream 11254 55758257 ~ 55774303 (+) True XLOC_000764
TCONS_00001255 mRNA downstream 433413 56180416 ~ 56184928 (+) True XLOC_000765
TCONS_00001233 other upstream 432954 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001221 other upstream 601626 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 1544049 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 1668995 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 2342324 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001304 other downstream 1600895 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 2413148 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 3384289 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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