RNA id: CI01000033_01312689_01320687.mRNA


Basic Information

Item Value
RNA id CI01000033_01312689_01320687.mRNA
length 1073
RNA type mRNA
GC content 0.49
exon number 9
gene id CI01000033_01312689_01320687
representative True

Chromosome Information

Item Value
chromosome id CI01000033
NCBI id null
chromosome length 1934898
location 1312626 ~ 1320687 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTAAGGAGTTTCTCGCTAAAGCCAAAGAAGATTTCCTAAAGAAATGGGAGAACCCAGCACAGAACACTGCATCTCTGGACCATTTTGAGAGGTTGAAGACTCTGGGCACTGGCTCGTTTGGGCGAGTCATGCTAGTCAAGCACAAAGAATCAGGCCAGCATTTTGCCATGAAGATCCTTGACAAACAGAAGGTGGTGAAACTGAAACAGATAGAACACACACTGAATGAGAAACGCATCCTGCAGGCTGTCAGCTTCCCGTTCTTGGTGCGATTGGAGCACTCGTTCAAGGATAATACTAACCTGTATATGGTAATGGAGTACGTTCCTGGAGGAGAGATGTTCTCTCACTTACGTAGAATCGGCCGGTTCAGTGAGCCTCATGCCCGATTCTACGCCGCCCAGATAGTTCTGACCTTTGAATACCTTCACTCGCTTGATCTTATCTACCGAGATCTGAAGCCTGAAAACCTGCTCATAGACCAGCAGGGATACATACAGGTAACAGATTTTGGTTTTGCTAAACGTGTAAAGGGCAGGACCTGGACACTGTGCGGCACGCCTGAGTACCTGGCACCAGAAATCATCCTCAGTAAAGGTTATAATAAAGCAGTGGACTGGTGGGCTCTGGGAGTGCTGATCTATGAGATGGCTGCTGGTTACCCTCCATTCTTTGCCGACCAGCCTATTCAGATCTATGAGAAGATTGTCTCTGGGAAGGTCCGCTTCCCCTCGCATTTTAGCTCTGACCTGAAGGACCTGCTGAGGAACCTGCTGCAGGTAGATCTGACGAAGCGCTTCGGTAACCTCAAGAACGGCGTCAATGACATCAAGGGCCACAAATGGTTTGCAACCACCGACTGGATCGCAATCTACCAGAAGAAGGTGGAGGCCCCCTTCATCCCTAAGTGCAAAGGCCCCGGGGACACCAGCAACTTTGACGACTACGAGGAAGAAGAAATCCGGGTCTCTTTCACAGAGAAATGTGGAAAGGAGTTTGCTGAATTCTAGAAGCAGCAGCAGTGGAGGAGAGGGATGGAGAGAAATTAGAAGTGGGGCAACGGTGAGAAGAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K04345 PKA; protein kinase A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU191817 lncRNA downstream 33593 1278624 ~ 1279033 (-) True G168871
TU191816 lncRNA downstream 34229 1278040 ~ 1278397 (-) True G168870
TU191815 lncRNA downstream 35601 1276467 ~ 1277025 (-) True G168869
TU191814 lncRNA downstream 36455 1275886 ~ 1276171 (-) True G168868
TU191811 lncRNA downstream 67573 1244846 ~ 1245053 (-) True CI01000033_01244910_01251102
TU191823 lncRNA upstream 54057 1374744 ~ 1374973 (-) True G168877
TU191852 lncRNA upstream 129024 1449711 ~ 1449915 (-) True G168906
TU191854 lncRNA upstream 163406 1484093 ~ 1486349 (-) True G168908
TU191868 lncRNA upstream 228592 1549279 ~ 1551732 (-) True G168918
TU191874 lncRNA upstream 246902 1567589 ~ 1567799 (-) True G168923
CI01000033_01296158_01307173.mRNA mRNA downstream 5453 1296158 ~ 1307173 (-) True CI01000033_01296158_01307173
CI01000033_01274093_01274303.mRNA mRNA downstream 38188 1274093 ~ 1274438 (-) True CI01000033_01274093_01274303
CI01000033_01255331_01259169.mRNA mRNA downstream 53447 1254970 ~ 1259179 (-) True CI01000033_01255331_01259169
CI01000033_01244910_01251102.mRNA mRNA downstream 61524 1244635 ~ 1251102 (-) False CI01000033_01244910_01251102
CI01000033_01119076_01152170.mRNA mRNA downstream 160456 1118929 ~ 1152170 (-) False CI01000033_01119076_01152170
CI01000033_01324488_01329483.mRNA mRNA upstream 3561 1324248 ~ 1329500 (-) True CI01000033_01324488_01329483
CI01000033_01336781_01348511.mRNA mRNA upstream 15877 1336564 ~ 1349405 (-) True CI01000033_01336781_01348511
CI01000033_01362658_01368574.mRNA mRNA upstream 41090 1361777 ~ 1368574 (-) True CI01000033_01362658_01368574
CI01000033_01380358_01381124.mRNA mRNA upstream 59367 1380054 ~ 1381124 (-) True CI01000033_01380358_01381124
CI01000033_01394360_01396488.mRNA mRNA upstream 72447 1393134 ~ 1396504 (-) True CI01000033_01394360_01396488
TU191791 other downstream 83077 1225588 ~ 1229549 (-) True G168847
TU191119 other downstream 541035 757371 ~ 771591 (-) True G168237

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00052076 True 2199 mRNA 0.48 10 NC_007114.7 49459828 ~ 49504023 (-)