RNA id: TU192252


Basic Information

Item Value
RNA id TU192252
length 474
lncRNA type sense_over
GC content 0.37
exon number 1
gene id CI01000034_00661553_00677752
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 661553 ~ 679148 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTTCCTTTGTGTTCAGCAGAACAAAGAAATTTGAGGGGGAGTAAATGATGACAGAATTTTCATTTTTGGGTGAACTATCCCTTTAAGAGCCGGATGTGTCTGGACAGCGTGCAACGTCTCCCTGATAGCCAGTTCACTCCTACGCTAGCTAATTGGTTCTGATGGGTCGTGTTCTGTATTTGCACACCTATGTTCTAGGATGAGGGTTTATAGGAGAATTTAAATGAGGTCAGATGGAGAAACAAACAGATGACTGTGATTTAATGAGCATGGTAAACCATTTATGTTTGTGAGACAACTGATCTGTTTCAATGTGAGATTCTTTACTTGTGATTGAGTATGACTTGAGTATGTTTGCCTGCTGAGGTTTTTATTGTCATAAATGTGTTTTTTTTTACTGTTGTTAAAATAAATTTCTAGTTCTTGATTGTTGCTGTAGTTCGTAAAGCCACCTTTATTTCTATAGTGTTTTG

Function

GO:

id name namespace
GO:0004177 aminopeptidase activity molecular_function

KEGG:

id description
K01262 pepP; Xaa-Pro aminopeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU192202 lncRNA upstream 29292 647858 ~ 648777 (+) True G169185
TU192198 lncRNA upstream 47520 626550 ~ 630549 (+) True G169181
TU192206 lncRNA upstream 52249 593002 ~ 593936 (+) True G169189
TU192232 lncRNA upstream 64830 612436 ~ 613239 (+) True G169215
TU192238 lncRNA upstream 87870 589854 ~ 590199 (+) True G169221
TU192218 lncRNA downstream 37613 716155 ~ 718431 (+) True CI01000034_00683973_00725610
TU192222 lncRNA downstream 54073 732615 ~ 733448 (+) True G169205
TU192220 lncRNA downstream 55213 733755 ~ 734093 (+) True G169203
TU192264 lncRNA downstream 85344 763886 ~ 764116 (+) True G169245
TU192269 lncRNA downstream 92201 770743 ~ 771116 (+) True G169250
CI01000034_00643011_00645310.mRNA mRNA upstream 32759 642901 ~ 645310 (+) False CI01000034_00643011_00645310
CI01000034_00637189_00642362.mRNA mRNA upstream 35630 636970 ~ 642439 (+) True CI01000034_00637189_00642362
CI01000034_00615867_00624387.mRNA mRNA upstream 52751 614958 ~ 625318 (+) False CI01000034_00615867_00624387
CI01000034_00545816_00547683.mRNA mRNA upstream 129555 545816 ~ 548514 (+) True CI01000034_00545816_00547683
CI01000034_00520790_00525323.mRNA mRNA upstream 152496 520672 ~ 525573 (+) True CI01000034_00520790_00525323
CI01000034_00683973_00725610.mRNA mRNA downstream 5431 683973 ~ 725905 (+) False CI01000034_00683973_00725610
CI01000034_00735558_00738466.mRNA mRNA downstream 56945 735487 ~ 739475 (+) True CI01000034_00735558_00738466
CI01000034_00785411_00801907.mRNA mRNA downstream 106003 784545 ~ 802059 (+) False CI01000034_00785411_00801907
CI01000034_00821815_00825192.mRNA mRNA downstream 142053 820595 ~ 825205 (+) True CI01000034_00821815_00825192
CI01000034_00860887_00862727.mRNA mRNA downstream 182345 860887 ~ 862901 (+) True CI01000034_00860887_00862727
TU192195 other upstream 31659 645451 ~ 646410 (+) True G169178
TU192338 other downstream 290719 969261 ~ 969921 (+) True G169309
TU192400 other downstream 424998 1103540 ~ 1119019 (+) True G169357
TU192449 other downstream 471755 1150297 ~ 1193560 (+) True G169394
TU192378 other downstream 571677 1250219 ~ 1310878 (+) True G169340
TU192663 other downstream 1047968 1726510 ~ 1726632 (+) True G169586

Expression Profile