RNA id: CI01000034_00976338_00983692.mRNA



Basic Information


Item Value
RNA id CI01000034_00976338_00983692.mRNA
length 1721
RNA type mRNA
GC content 0.41
exon number 8
gene id CI01000034_00976338_00983692
representative True

Chromosome Information


Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 976145 ~ 984275 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGACTACTACGCACAGCATAACAGATAGGCTAGAGTGAGATAAAGACAGCAATATATGACTCATGTCTGATTATAATATCAAAGGGTACTAAATGAGAGCTTCCCTCTGACAGTGCACTTTGCTATACTTTGTTTTATTGTATTGAATATTTCAAAATATTGTATACTGTACTGTTAAAGTACGGTTAATTGATAAATATTACCTAAATACAATTGCTCTTTACATTAGGTGTCCCATACAGAAATTGGGCACTTGTTTCTGGCTGTTTATCATAAAAATGATAAATAGAAAGCAGGCAATAGAGGAGGGCAATCATTCTAACCAGCACCGTAGGCCAAAAATACCAAAAATATCAGTGAAGGCAAACCAAGAAGCAGCTTTCAGTTTCGTTTCTGTGAAAGTGGGAGGAGAAGTTTTGCACCACAAACAACTCAACATGGAGGAACCCGTTCGCTTCCTGCTGTTCAAATAATGCAGATGATACGACAGCCTCCTTCATGAAATGATTATTTCAGAGCGTTCCAGTATCTGACTGGCTGAGTGAAAACAGCATAAAGGACAGCAAGGGATAAAAAGAGGAGGATGAAGAAACAAAGCTGTAGGAAGAGACAAGAGATGGAGTTGTCGTCCCTCTGCAAACCCAAGAAGAAGAAACAAGCCAAGAGACAAAACTGCCCCAAGTCGTCTGCAAGACACAAAAACTCTCAAAATAAATCTCAACTTCCTGTTACATGTGGTCATAAAGAGGGCGTCTTGCATTTGAAGAAATATAATAACAAACAGAAGTGCATCTTCAGTGAAGGCCAGTGGTTCAAGCCCACTGAGTTTGAGAGGTTTGGGATGAAGGACAGGAACAAAAAATGGAGAACCAGCATCCTTTGCAAAGGCATTACTCTCCAGAAACTCATAGAGTGCTTGACTGCAGTGGTACAAGACTATTCACTCAGTTTTGTATTTATCCCAGGGCGTTGTGGGAGATGCATAAGAACAGAGAACTTCTGGCTGAGCCCTGAGGATTTCATCAAATTGAACAAACCAGATGGATCATGGAGGAAAGATATTGTGTCCCATGGAATGCCTCTTGGGAAACTTATAACGAATGATGACGTGTGTTTCGTGTGTGACTCTGGGGGAGATCTTGTGTGTTGTGACGAATGTCCACGAGCTTTTCATTCACACTGTCATCTACCAGCTGCAGACGGAGACTCACCTGGAAGCAAGTGGAGCTGCACATTCTGTGTGATGAAGAATACGAAAGATTCCAGTCAAAAGACCCAACAGGAAGTTTTAAGCAGTCCAGTCTCTCAATACACACTGGTTCCAGGACACAGTGAAAACATTTGTGGTCCCATGATGCTGGGCAGAGTGAAGCTGAACCTGGAAAATAATGATTATCAAACAGTGCGAGAGTTTATCTCGGATATTGAATACGTTTTTCACCACTGCACATCCAACAGGGACAGTGACTTCAGTAGAATGACCTCTAGGCTGAAGGAAATGTTTGAAACCATCTTTAAGCTCATATAGGACTGAAACGACAAGCCCACATTATCAACAACTCAGGCAATAAAAAACTGTCAACAATTTGTTGTTGTTGTTGTTTGATCTCATATGGCCCGTTTTAAGGGCCTGCAATAATGCGATTTGACGAGTGGGGCGTCAATGATGCAATCCCAGATGCAATTCAACAGAAGAAGACACTAGTGATGGAAGAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU194864 lncRNA downstream 10042 965839 ~ 966103 (-) True G171531
TU194863 lncRNA downstream 11928 963997 ~ 964217 (-) True G171530
TU194776 lncRNA downstream 232374 743066 ~ 743771 (-) True G171451
TU194703 lncRNA downstream 422466 553304 ~ 553679 (-) True G171382
TU194676 lncRNA downstream 507437 465412 ~ 468708 (-) True G171356
TU194729 lncRNA upstream 94087 1078362 ~ 1080996 (-) True G171404
TU194885 lncRNA upstream 138142 1122417 ~ 1122719 (-) True G171549
TU194730 lncRNA upstream 142210 1126485 ~ 1127643 (-) True G171405
TU194908 lncRNA upstream 213703 1197978 ~ 1198270 (-) True G171572
TU194918 lncRNA upstream 263868 1248143 ~ 1248353 (-) True G171582
CI01000034_00956861_00961594.mRNA mRNA downstream 14551 956544 ~ 961594 (-) True CI01000034_00956861_00961594
CI01000034_00934363_00941644.mRNA mRNA downstream 34501 932793 ~ 941644 (-) True CI01000034_00934363_00941644
CI01000034_00881526_00896469.mRNA mRNA downstream 79676 881202 ~ 896469 (-) True CI01000034_00881526_00896469
CI01000034_00728121_00732221.mRNA mRNA downstream 243924 727438 ~ 732221 (-) True CI01000034_00728121_00732221
CI01000034_00648618_00659733.mRNA mRNA downstream 316412 647886 ~ 659733 (-) True CI01000034_00648618_00659733
CI01000034_00984505_00989012.mRNA mRNA upstream 144 984419 ~ 989885 (-) True CI01000034_00984505_00989012
CI01000034_00994278_01019787.mRNA mRNA upstream 9223 993498 ~ 1019864 (-) True CI01000034_00994278_01019787
CI01000034_01021753_01050726.mRNA mRNA upstream 35847 1020122 ~ 1053355 (-) True CI01000034_01021753_01050726
CI01000034_01062505_01083413.mRNA mRNA upstream 78169 1062444 ~ 1083413 (-) False CI01000034_01062505_01083413
CI01000034_01102550_01104926.mRNA mRNA upstream 118024 1102299 ~ 1104926 (-) True CI01000034_01102550_01104926
TU194626 other downstream 391862 577872 ~ 584283 (-) True G171318
TU194534 other downstream 708899 229404 ~ 267246 (-) True G171229
TU194720 other upstream 87338 1072584 ~ 1077222 (-) True G171395
TU194733 other upstream 327254 1318049 ~ 1318254 (-) True G171408
TU195117 other upstream 879843 1864118 ~ 1866373 (-) True G171755
TU195220 other upstream 1457546 2441821 ~ 2446293 (-) False G171835
TU195221 other upstream 1457546 2441821 ~ 2446293 (-) False G171835

Expression Profile