RNA id: CI01000034_01062505_01083413.mRNA


Basic Information

Item Value
RNA id CI01000034_01062505_01083413.mRNA
length 1818
RNA type mRNA
GC content 0.44
exon number 16
gene id CI01000034_01062505_01083413
representative False

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1062444 ~ 1083413 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGAACCATCTTCAGTGTCCACCGATGGAGAGGAGAAAGAGGAAATGTGCCCCAAAAAGCATGAAAGTGCTGTTTCCTGTCATCTCACCCGAGAGCTCCAGTACAGATGGCACAGAAAAATGACGATGTTTGCTACGTGTGTCACTCTGTGGGAGATCTCGTGTGTTGTGACGAATGTCCACGAGCTTTTCATTCATACTGTCACCTACCAGCTGTGGACGAAGACTCACCTGGGAGAGAATTGTATTTTATGTAGAGGGAAGTGGTATAGTCCCAGTCAGTTTGAGGTGATTGGAGGAAAGAGGCATAACAAGAAGTGGAAGTTTAGCATCTATTACATGCCATCAAACGGCTTTCAACAAGTGCAACTACTTGAACTCATAAAGAGCGGGGTTCTTCCAGAGTTTGGACACCTGAGGGAGTCATTTAAACAGGTGACGCAGACCAACAAAGGCAGTGCAAACTCTGTGCAAAATATGATGAGGAGGAATGAATTAATGAATGCCTTAAAAGGTTTTCCAGAGTCCTGGAAAAGATTGTTTGCCAAGAGCGTTTCAATACCTGTGTGTGGAATTGAAGAGAACACACTACAGAGGGAAACAATCCAGCCAGAACCTGGAGTCTCTCCTGTCGTAGAGGAGGCCGTCCAGACCACAGATGACCCAACCGGAGCAGCACAGCTCAGCTTCAGCGCTGCCCCTGCTGAATGGCAGAACCCTATTACTTCTGAAGAGACTCAGGAAACAAGGCAGCTGCAGTTATATGAATTTCTGGCAAAACAGTTTAATACCATCAACAACACCCTGCAATCAATTGATTTGTCTTTAAAGAAGCTGGTGGAAAAGCAGTCACATGACACACTGCCTCAATACATCAGTGTAACTCCTGCTGTTATAGAAAATCCTCTGATTCACTCCTTAGTCAAGCAAGACAAGAAATCAGGTGGAATAAAAGGCAGACCTACTGAAAGAGAACCACAGGACATGGAAAGAGAGTCGATCACAGACGCTGAGTCTGAATCAGAATCAGAATCCGAATGGGATCCAGAGAGCAGCACAGAATACGACAGTCTGAGTGAGAACGACAGAGAAAAGAAAGGAAAACGAGGGGGGAAAAGGAAGATGAGGAAACGAATGTACTCCAGCCAGAGTTTGAGACAAACAATTGAAAACAAACTCGAACTTCCCGTCACATGTGGAGCTAAAGATGGTGTCCTTTATGTGGAGAAATATAATGACCTGCAGGCGTGCATCTTCAGTGAAGGCCAGTGGTTCAAGCCTAGTGACTTTGAGAGATTTGGAGGAAAGGCAAGGAGCAAAAAGTGGAGGAACAGCATCTTTTACAATGACATTCCACTCCAGGAACTCATAAAGGATGGATTTCTTTCACCCTTTAAGAAATGTGGAGTTCAGAATAAACAGAATGACTCTCCTGAATCCTCACCAGTTACTGACCGGCTCAGAAAAAGGAAGCACTGTCAGTACCTGCTGTTACACCTGCTACATGAGAGCATGACTGACCCCTGCACTAATGTTTCAGGATACAGTAAAAACATTTATGGTCCCATGATGCTGGGCAGAGTGAAGCTGAACCTGGAGAATAACGATTATCAAACAGTGCAAGAGTTTGTCTCCGATATTGAACAGATTTTTAACAACTGTTGCACCTCCAGCGGAGATAATGACTCCAGTAAAATGAACTCTCGGCTGAAGGAAGCATTCAAGAAGGAGTTTAAAACTGTCTTTAAGCTCTTATAACATCATGCTGTGGGTTGATTGTCAATGTGTCAAAAAGTTAATATCAGTTTTTTAAATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194864 lncRNA downstream 96341 965839 ~ 966103 (-) True G171531
TU194863 lncRNA downstream 98227 963997 ~ 964217 (-) True G171530
TU194776 lncRNA downstream 318673 743066 ~ 743771 (-) True G171451
TU194703 lncRNA downstream 508765 553304 ~ 553679 (-) True G171382
TU194676 lncRNA downstream 593736 465412 ~ 468708 (-) True G171356
TU194885 lncRNA upstream 39004 1122417 ~ 1122719 (-) True G171549
TU194730 lncRNA upstream 43072 1126485 ~ 1127643 (-) True G171405
TU194908 lncRNA upstream 114565 1197978 ~ 1198270 (-) True G171572
TU194918 lncRNA upstream 164730 1248143 ~ 1248353 (-) True G171582
TU194972 lncRNA upstream 316911 1400324 ~ 1401912 (-) True G171631
CI01000034_01021753_01050726.mRNA mRNA downstream 9089 1020122 ~ 1053355 (-) True CI01000034_01021753_01050726
CI01000034_00994278_01019787.mRNA mRNA downstream 42580 993498 ~ 1019864 (-) True CI01000034_00994278_01019787
CI01000034_00984505_00989012.mRNA mRNA downstream 72559 984419 ~ 989885 (-) True CI01000034_00984505_00989012
CI01000034_00976338_00983692.mRNA mRNA downstream 78169 976145 ~ 984275 (-) True CI01000034_00976338_00983692
CI01000034_00956861_00961594.mRNA mRNA downstream 100850 956544 ~ 961594 (-) True CI01000034_00956861_00961594
CI01000034_01102550_01104926.mRNA mRNA upstream 18886 1102299 ~ 1104926 (-) True CI01000034_01102550_01104926
CI01000034_01109855_01118819.mRNA mRNA upstream 26426 1109839 ~ 1121584 (-) True CI01000034_01109855_01118819
CI01000034_01130811_01134095.mRNA mRNA upstream 46112 1129525 ~ 1134095 (-) True CI01000034_01130811_01134095
CI01000034_01150993_01154752.mRNA mRNA upstream 67516 1150929 ~ 1154752 (-) True CI01000034_01150993_01154752
CI01000034_01234426_01238796.mRNA mRNA upstream 150965 1234378 ~ 1238796 (-) True CI01000034_01234426_01238796
TU194626 other downstream 478161 577872 ~ 584283 (-) True G171318
TU194534 other downstream 795198 229404 ~ 267246 (-) True G171229
TU194733 other upstream 228116 1318049 ~ 1318254 (-) True G171408
TU195117 other upstream 780705 1864118 ~ 1866373 (-) True G171755
TU195220 other upstream 1358408 2441821 ~ 2446293 (-) False G171835
TU195221 other upstream 1358408 2441821 ~ 2446293 (-) False G171835
TU195219 other upstream 1358506 2441919 ~ 2446293 (-) True G171835

Expression Profile