RNA id: CI01000034_01150993_01154752.mRNA


Basic Information

Item Value
RNA id CI01000034_01150993_01154752.mRNA
length 477
RNA type mRNA
GC content 0.46
exon number 5
gene id CI01000034_01150993_01154752
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1150929 ~ 1154752 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCAATGGAACGAGGAGCCAGCTAAAAGCAAAAAATACAGTCTGTACTTTCACTGCACATTACCCATACTGCCAGTTGTAGAAATGGCGATGAACAGCATCCTCAACCCTGATGACATTAAAAAAGCACTGGATGCATTTAAAGCTGTCGACTCATTCGACCACAAGAGGTTTTTTGAGATGGTCGGACTGAAGGCGAAGTCGGCTGACGATGTGAAAAAGGCTTTCCATGTCCTGGATGCTGACAATAGCGGATTTATAGAAGAAGAGGAACTTAAGTTTGTTCTGAAGGGTTTTGCTACAGATGGGAGAGACCTGACCGATAAGGAGACCAAAGCATTCCTGCAGGCTGCGGACAAAGATGGAGATGGAAAGATTGGAGCAGAAGAGTTTGCTGCTCTGGTTCGTGAATAAGTGACACGGACTCTTGGCCTGTTCATACCTCATGACCCCTTGACCTCGACCTCAGCCTAATACA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194730 lncRNA downstream 23286 1126485 ~ 1127643 (-) True G171405
TU194885 lncRNA downstream 28210 1122417 ~ 1122719 (-) True G171549
TU194729 lncRNA downstream 69933 1078362 ~ 1080996 (-) True G171404
TU194864 lncRNA downstream 184826 965839 ~ 966103 (-) True G171531
TU194863 lncRNA downstream 186712 963997 ~ 964217 (-) True G171530
TU194908 lncRNA upstream 43226 1197978 ~ 1198270 (-) True G171572
TU194918 lncRNA upstream 93391 1248143 ~ 1248353 (-) True G171582
TU194972 lncRNA upstream 245572 1400324 ~ 1401912 (-) True G171631
TU195064 lncRNA upstream 555926 1710678 ~ 1710957 (-) True G171704
TU195072 lncRNA upstream 585892 1740644 ~ 1741140 (-) True G171712
CI01000034_01130811_01134095.mRNA mRNA downstream 16834 1129525 ~ 1134095 (-) True CI01000034_01130811_01134095
CI01000034_01109855_01118819.mRNA mRNA downstream 29345 1109839 ~ 1121584 (-) True CI01000034_01109855_01118819
CI01000034_01102550_01104926.mRNA mRNA downstream 46003 1102299 ~ 1104926 (-) True CI01000034_01102550_01104926
CI01000034_01062505_01083413.mRNA mRNA downstream 67516 1062444 ~ 1083413 (-) False CI01000034_01062505_01083413
CI01000034_01021753_01050726.mRNA mRNA downstream 97574 1020122 ~ 1053355 (-) True CI01000034_01021753_01050726
CI01000034_01234426_01238796.mRNA mRNA upstream 79626 1234378 ~ 1238796 (-) True CI01000034_01234426_01238796
CI01000034_01286141_01289408.mRNA mRNA upstream 130322 1285074 ~ 1289408 (-) True CI01000034_01286141_01289408
CI01000034_01294226_01301994.mRNA mRNA upstream 139424 1294176 ~ 1301994 (-) True CI01000034_01294226_01301994
CI01000034_01308438_01309828.mRNA mRNA upstream 153567 1308319 ~ 1310879 (-) True CI01000034_01308438_01309828
CI01000034_01312431_01312780.mRNA mRNA upstream 156792 1311544 ~ 1312780 (-) False CI01000034_01312431_01312780
TU194720 other downstream 73707 1072584 ~ 1077222 (-) True G171395
TU194626 other downstream 566646 577872 ~ 584283 (-) True G171318
TU194534 other downstream 883683 229404 ~ 267246 (-) True G171229
TU194733 other upstream 156777 1318049 ~ 1318254 (-) True G171408
TU195117 other upstream 709366 1864118 ~ 1866373 (-) True G171755
TU195220 other upstream 1287069 2441821 ~ 2446293 (-) False G171835
TU195221 other upstream 1287069 2441821 ~ 2446293 (-) False G171835
TU195219 other upstream 1287167 2441919 ~ 2446293 (-) True G171835

Expression Profile