RNA id: CI01000034_01286141_01289408.mRNA


Basic Information

Item Value
RNA id CI01000034_01286141_01289408.mRNA
length 1632
RNA type mRNA
GC content 0.38
exon number 5
gene id CI01000034_01286141_01289408
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1285074 ~ 1289408 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATGCCATAGCAGTGTCCAATAACACTGTTAATATAACTGAAGAATTCCCTTACATCAGCACGTGTGGCTCATACAGCCCCCAGAGCTGTCTGTTTTCTCAGATCTGCAACATTTGCTGTGTGTTGGCTCTATGGATTGTCACAATCAGATTTCAACAGATCCGCGATTTGGGTCGTGCGTCTCATTTAAATACTGCAGGTCTCGTGCTTGGCTTCATCTCTAGCATTGGCATTTCCATTCTAGGAAACTTCCAGCAATCTGTAGTGAATGGGGTTCATCTGCTTGGGGCGCTCATGGCCTTCTTCCTGGGTTTGGCTTACTTCTGGGTCCAGGCGTGGCTTGCGTACTACAGCCCGCCGTCACTGTTTGTTCTCCATGGCACAGGGTTTCGCTCTGAAGCTGCCATGTGTGAGTGGGCTCTGGTCATGTGTTTTTTTGCACTGTTTGGGATTTTTGCAGCAGAGTTCAGACACATTGACTTTCACAAGCTCACCGTACAGAAGAAGGGAATAAAAACCGCCAGTGATGCTAATGGTGTGTGGACATTACAAGAGATTCACTGAAGAAGAGCTGGCAAGTTGTGGCTGTGGTAATCAGACAGATACACATACAACTGGAGCAAACTCACCATATAACATGGACACAACATTGGACTATAACCTGCACAACATTGCTAAATGCACACATACATACATGATATAAAATGCTCCCATTTTACGCCACGTTTGGCGTTGAATTGGAGTTGGATTTTACAGTATAAATTATATTGCGGAAATGCTATGCTGAATTTATGAGCAACATTGTTTACATGATATATGTTATATACTTTAAGATGATTATAGTGTATAATGTGAGAGCATAATCAATGTAGTATTCCACTTGTTTATGTTATTATAGTACAACAAACGGTAATACCTCAAACCGGATCTCTTTGGTCTGTTTTTTAGCCTTAATGACTTTGTTTACATAATGCTATTAAATATATTCGGTTATAAATAATTGAATTTTATCTGATTATTATCAAAGAAAGCTGTTATTTAATATAAATAAATAAATAAATGTGACAATATTAACAGTTTCAGTCTACAAACAGTTCAGTAATATGTAGTAGTAGCCCAAAAGTTCTTCCCTATTGTGACGTATGTCCAAATGACACTGCTTCTCTAACAAGAAAAAAAATGTAGGGTGAGACTTGATTTTTTTCCATTGGGAAGTGATTGGATAGTTGTGGTTTGCAATAGTGTAACAGAAGGGTTCTGGAAGTCAAAACCTTTCATTTTCTCCATAGGGGAATTGATTCTTAGCCCTACTGTGAGCTATGAGGTTGTTAATCGATGGTATTTACTTCTGTTGAAGCTGTCAGCCCACACAGTGGAATTTGTGGTGAAAAACTACATTACCCATGATGCTGTACAGAAAATACCACCAACCAAAGAGTCGAAACAAGCAAAATGTGCCAAAAGAACTCTTTAGCTCCGCCCACTCCCATGAAGCGCCGCAAATAATGTAAATGAGTCAGTCTTCCTACACTCTCAACATACTAAAATATGTGTATATATAAATATATTTGCATATATATATATACTTGCATATACTTAATTCAAACTTTGAATTCACTGATTGCAATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194918 lncRNA downstream 36721 1248143 ~ 1248353 (-) True G171582
TU194908 lncRNA downstream 86804 1197978 ~ 1198270 (-) True G171572
TU194730 lncRNA downstream 157431 1126485 ~ 1127643 (-) True G171405
TU194885 lncRNA downstream 162355 1122417 ~ 1122719 (-) True G171549
TU194729 lncRNA downstream 204078 1078362 ~ 1080996 (-) True G171404
TU194972 lncRNA upstream 110916 1400324 ~ 1401912 (-) True G171631
TU195064 lncRNA upstream 421270 1710678 ~ 1710957 (-) True G171704
TU195072 lncRNA upstream 451236 1740644 ~ 1741140 (-) True G171712
TU195086 lncRNA upstream 475093 1764501 ~ 1768078 (-) True G171724
TU195093 lncRNA upstream 491438 1780846 ~ 1781056 (-) True G171731
CI01000034_01234426_01238796.mRNA mRNA downstream 46278 1234378 ~ 1238796 (-) True CI01000034_01234426_01238796
CI01000034_01150993_01154752.mRNA mRNA downstream 130322 1150929 ~ 1154752 (-) True CI01000034_01150993_01154752
CI01000034_01130811_01134095.mRNA mRNA downstream 150979 1129525 ~ 1134095 (-) True CI01000034_01130811_01134095
CI01000034_01109855_01118819.mRNA mRNA downstream 163490 1109839 ~ 1121584 (-) True CI01000034_01109855_01118819
CI01000034_01102550_01104926.mRNA mRNA downstream 180148 1102299 ~ 1104926 (-) True CI01000034_01102550_01104926
CI01000034_01294226_01301994.mRNA mRNA upstream 4768 1294176 ~ 1301994 (-) True CI01000034_01294226_01301994
CI01000034_01308438_01309828.mRNA mRNA upstream 18911 1308319 ~ 1310879 (-) True CI01000034_01308438_01309828
CI01000034_01312431_01312780.mRNA mRNA upstream 22136 1311544 ~ 1312780 (-) False CI01000034_01312431_01312780
CI01000034_01323481_01381800.mRNA mRNA upstream 33970 1323378 ~ 1383472 (-) True CI01000034_01323481_01381800
CI01000034_01398718_01404884.mRNA mRNA upstream 109310 1398718 ~ 1404884 (-) True CI01000034_01398718_01404884
TU194720 other downstream 207852 1072584 ~ 1077222 (-) True G171395
TU194626 other downstream 700791 577872 ~ 584283 (-) True G171318
TU194534 other downstream 1017828 229404 ~ 267246 (-) True G171229
TU194733 other upstream 22121 1318049 ~ 1318254 (-) True G171408
TU195117 other upstream 574710 1864118 ~ 1866373 (-) True G171755
TU195220 other upstream 1152413 2441821 ~ 2446293 (-) False G171835
TU195221 other upstream 1152413 2441821 ~ 2446293 (-) False G171835
TU195219 other upstream 1152511 2441919 ~ 2446293 (-) True G171835

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049985 True 1210 mRNA 0.40 7 NC_007114.7 24220354 ~ 24226028 (+)