RNA id: CI01000034_01308438_01309828.mRNA


Basic Information

Item Value
RNA id CI01000034_01308438_01309828.mRNA
length 2451
RNA type mRNA
GC content 0.45
exon number 2
gene id CI01000034_01308438_01309828
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1308319 ~ 1310879 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATCTTTTCTTCTCCCAGCTGATTTTTTTTGTTGATACTCGAGCGATTCTGCTCTCCGCCGAAATGGCCGTGTGAACTGCAGCCTGTAGACAGCGCGCAAACTCCTCAGTGCATCAACATAGTGCACTGGCTCAGTACATTTATATCAAAATGGCGTAAGTATATTTTTAATTGTTTTTGATTTAAAATGTCACGTCGTCTCACCCACCCGGCTGGGCGTGTGTGTACCATTAAATAATTAAGCCTTATTATGGCCGTTAATGTTTTCAAGTATTTTTAATGTGACTTAAATGTATATTGTGGATTTGTGAATTTTAATAGATAATAGAAATTGGCATGACCACCGTCTCGAGCTTAGCGCGCCATATGTCTACCCGACAGTGACAACATCAATCGATGAATTTTTAGTCATTTCTGTTTTAAAATGTACTATAATGTTTATATTTTGTATAGTGAATGCATCTCCAACCCGCCTGAATATGTTTAACTCAAAATAAACACGAGTGAGACAGTTTAATTGATTTCTTTGTCACCGCGTGCTCTTTATAAAATGGCGTACGTTCCTGAAAAGGGAGCGGCTAGTCCCTGAAATGGCGGAGTCTTTATCCACCTTGATTAAAAAAAAAAAAATAGAACATCGGAGTACATTTTACCTCGAACAACAACTAATCAACTAACTTTGGGATCTTATAAAAAGCAATGAGATTTTGCCTCTGGTAAACTGAGGTTGAGATTTTAGAAATGGAACCCAGTCTGCTGACAGTAAGTGATAAAGAATGTCACGTGGTAGATGCCATATATGGGTAGGGTGTCTGCAGATGACGTCATTGTGAGTCAGGAATAACTAATGAGGCTTTTTTTTTTTTTTTTTTTTTTCTCTTGCAAAGTAGCTATTGTGTGTTTGCATTTATGAAATTATGTAAGTGATTAACTACTTTTAATATGTTTACAGGTCCTTTGTGGCAACTCTGATCTTTGCTGTACCTGACAGCACGAAATTATTCGAATTCTCAGTAGAAGACTCGTTGATTCCACTTGAAATAGACAGCCATGTCTTTGATGAGCTCACGGTTTGGCCAGGACGATATGGAGGACCTTTTTTGGGACCCATCATCACCGATGGCTGACCCTCTGGGGTCCATCCTAGATAAAGATGAGGAGGTTCTTCCTCTCGGAGGCGCTGAATCGCCCCTCTCATCTTTCTCTTCCTCTCCACTTCCCTCTCTCTCACCACCCTGCACTCCTCCCTCCACTCAGAGGGGGGAGAAGGCTGGGCTCAATCAGCTGTCCCTGTCCTGGTTCCCCTCAGATGAGCTGTGCCTAGATAATCATGGTGCAGACAGTGGCAAAGATCATTCGTTCAGTGAAATGGATTGGATGACGGAGCGAATTGATTTGAGTGAGTTTGATCTGGAGTCTTTCATTGGCTCCTATGATTCTGAGGATCCACCCAGTTCTCCTGAGGAGCTCATCGCTTCTCTGGAGTCAGAGATAGACCTGGAGTCCCAGTCTGTAGCTTCTGACAATACGCCTTCACCCTCTCTAACAGTGTCTGTCCCTGAAATCAATCAACTTTCCAACCTTTCATTTACTTTGAATACTCCAGTTGCTACTCCTTTCATTCCCTCATCACCCTGTGAATTGTCAGATTCCTCCTCTGTGGTCCCTGAGCCCCAGGCTGAGTTTGAGATAAAGTCTGAACCGGCCTCCCCAGTCCCATCACCTTCCATCCTTCCACCCGAGTCCCCTACTGATACTCTTGAGCTTGGTTGCGAGGTGGACATAGCTGAAGTGCAGAGTCCATCCCCTGTCGAGATGCGGGTGCCCAAAATTGTCCTGTCCCTCTCCCCAACCCGCATCCTTCTTGTACTTTCTCCCAAAGAGGAGGTTAATGCGATGGTTACCCATCCAGGTGAGGTGGTTGTGGAGAATTCCCCAAGTCCAACTTCCCCTGACCCACAAATCCCAACCTCTCCCCAGTCTCTGTCTTCTAGGGTGAAGTCCTACCCCACACCTGATTCTAAGCCCACCCAAAATCAGCAGTCAGAGTCGCCTACCCTCGCAGGAAGAGTGAAGTCAGTCAGTGGCTCAAAGGTTGTGGTTGAGAAGAAAAAGCTGAAGAAAATGGAGCAGAACAAGACTGCGGCGACCCGCTACAGACAGAAAAAGCGTGCAGAGCAAGAGGCCCTCCAGTCAGAGTGTACAGTCCTTGAGGAGAGGAATCAAGAGCTGGTGGAAAAAGCAGAGTCCATAGCTAAAGAGATCCAGTACCTGAAAGAGCTAATGGAAGAAGTCAAGAGGGCAAGAGAGAGCAAAAGTGTGAGGTCATAGAATAATATGGACACAGAGGCTTGAAGCTGAGAGAAATGGACGGTTTCAGCATAGCCTGAAGTGCAGAATACTAGGAATGTTGGTTCTAAAAGAAAGTATTTTATGAAGGGTTGAATAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K04374 ATF4, CREB2; cyclic AMP-dependent transcription factor ATF-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194918 lncRNA downstream 59966 1248143 ~ 1248353 (-) True G171582
TU194908 lncRNA downstream 110049 1197978 ~ 1198270 (-) True G171572
TU194730 lncRNA downstream 180676 1126485 ~ 1127643 (-) True G171405
TU194885 lncRNA downstream 185600 1122417 ~ 1122719 (-) True G171549
TU194729 lncRNA downstream 227323 1078362 ~ 1080996 (-) True G171404
TU194972 lncRNA upstream 89445 1400324 ~ 1401912 (-) True G171631
TU195064 lncRNA upstream 399799 1710678 ~ 1710957 (-) True G171704
TU195072 lncRNA upstream 429765 1740644 ~ 1741140 (-) True G171712
TU195086 lncRNA upstream 453622 1764501 ~ 1768078 (-) True G171724
TU195093 lncRNA upstream 469967 1780846 ~ 1781056 (-) True G171731
CI01000034_01294226_01301994.mRNA mRNA downstream 6325 1294176 ~ 1301994 (-) True CI01000034_01294226_01301994
CI01000034_01286141_01289408.mRNA mRNA downstream 18911 1285074 ~ 1289408 (-) True CI01000034_01286141_01289408
CI01000034_01234426_01238796.mRNA mRNA downstream 69523 1234378 ~ 1238796 (-) True CI01000034_01234426_01238796
CI01000034_01150993_01154752.mRNA mRNA downstream 153567 1150929 ~ 1154752 (-) True CI01000034_01150993_01154752
CI01000034_01130811_01134095.mRNA mRNA downstream 174224 1129525 ~ 1134095 (-) True CI01000034_01130811_01134095
CI01000034_01312431_01312780.mRNA mRNA upstream 665 1311544 ~ 1312780 (-) False CI01000034_01312431_01312780
CI01000034_01323481_01381800.mRNA mRNA upstream 12499 1323378 ~ 1383472 (-) True CI01000034_01323481_01381800
CI01000034_01398718_01404884.mRNA mRNA upstream 87839 1398718 ~ 1404884 (-) True CI01000034_01398718_01404884
CI01000034_01498024_01498299.mRNA mRNA upstream 186201 1497080 ~ 1499836 (-) True CI01000034_01498024_01498299
CI01000034_01603228_01604932.mRNA mRNA upstream 291555 1602434 ~ 1605430 (-) True CI01000034_01603228_01604932
TU194720 other downstream 231097 1072584 ~ 1077222 (-) True G171395
TU194626 other downstream 724036 577872 ~ 584283 (-) True G171318
TU194534 other downstream 1041073 229404 ~ 267246 (-) True G171229
TU194733 other upstream 650 1318049 ~ 1318254 (-) True G171408
TU195117 other upstream 553239 1864118 ~ 1866373 (-) True G171755
TU195220 other upstream 1130942 2441821 ~ 2446293 (-) False G171835
TU195221 other upstream 1130942 2441821 ~ 2446293 (-) False G171835
TU195219 other upstream 1131040 2441919 ~ 2446293 (-) True G171835

Expression Profile