RNA id: CI01000034_01312431_01312780.mRNA



Basic Information


Item Value
RNA id CI01000034_01312431_01312780.mRNA
length 1237
RNA type mRNA
GC content 0.38
exon number 1
gene id CI01000034_01312431_01312780
representative False

Chromosome Information


Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1311529 ~ 1312780 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGTCTGTTTTCATCTCGATGGCGACCGCAGAACCTGCACCAGCCTGGTGGAAACTGACCTTCCTGCGTAAGAAGAAATCGGAGTCGAAAGTGTTGTACGAAATCCCTGGAGACCACAGCAGCAATGCCGGGGAGACACCTGGGACCCCCGACGCAGCTGTGGACAGCCAGTTTAACGCCCGCTTGGAGCGCATCGTGGACAAAACGGCAACAAAGGGGCGCCATGTGAAAGTCTCACATTCGGGCCGGTTTAAAGAGAAGAAGAGAATCCGCTCTACGCTAGCAGAGAACCCTGACCTGTTCCCTGAGGCAGAAACTACGACTAGCGAGAATAATACAACTGGAAAATAGAGTCACTGTGTAAACACACTAGCATGTGTGTGTAAAACAGCTCAAGAGGGCCTTGGTCTATGCAGCACTCTTCCATTGATGTCCTCTGTAGTTTACAATCACCTGAGGCTGAGCCTGAAGCAAGAAAAGGATCGCTGAATGAATTAGTGACTGATCTATACTAATGTTTGGGAACAAAGACAGGCATAAACCCAAAGATCAGGTTTCTTCACAGATACACACAGCAGGACTGCATTGTGGTCGTCTGATGAAAGGCTGACATTTAGCAAATGTTTAGCAAAGAGAAATCCACTGAGAGGGAATCAAATCAATCATATATCAGCACAAGATATCAGTAATGATAGTGGGTTTTTTGCTTATTCTATTTTATATGGTGAAAATTACAATAGCGGCTACAGCACTTTTGATTCAAAAGATTTAAGGAATATTATCAGCAATAATATGCTACTAAGTTAAAAGATCATATAGAGACTTTTATTCAAAATTTAAATTGTAGCCTACCTAATTATATAAAATAGATTGTTGTTATTATTATCACTGTTATTTTTTTATTTTTTATTTTTTTTTGGCCTCCGAACCACCAACTAGACTAAAATATTTTTTTGAATACATGTGCCTGTTGCAAGAATATACTATTTTATGTCTGTGTTGATGTGTCTGGTTTAATTATGATCTTTGATCTTTGATATTTATTGTACAGAGAGTTTATAAAATTTAATTAGAACATGGTGGGTTTTTCAAATTTTAATTATTGTGCTTTTTATGTTGAAAGAAATGGTCAAATATTTGCACAATGCCTAATTTAATTGTTTGATTAGCTGGGATTTTGTAAAAAAAAAATAAAATAAATACGTGTTGTTTTTAAATATACCTCTGTGGAAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU194918 lncRNA downstream 63191 1248143 ~ 1248353 (-) True G171582
TU194908 lncRNA downstream 113274 1197978 ~ 1198270 (-) True G171572
TU194730 lncRNA downstream 183901 1126485 ~ 1127643 (-) True G171405
TU194885 lncRNA downstream 188825 1122417 ~ 1122719 (-) True G171549
TU194729 lncRNA downstream 230548 1078362 ~ 1080996 (-) True G171404
TU194972 lncRNA upstream 87544 1400324 ~ 1401912 (-) True G171631
TU195064 lncRNA upstream 397898 1710678 ~ 1710957 (-) True G171704
TU195072 lncRNA upstream 427864 1740644 ~ 1741140 (-) True G171712
TU195086 lncRNA upstream 451721 1764501 ~ 1768078 (-) True G171724
TU195093 lncRNA upstream 468066 1780846 ~ 1781056 (-) True G171731
CI01000034_01308438_01309828.mRNA mRNA downstream 665 1308319 ~ 1310879 (-) True CI01000034_01308438_01309828
CI01000034_01294226_01301994.mRNA mRNA downstream 9550 1294176 ~ 1301994 (-) True CI01000034_01294226_01301994
CI01000034_01286141_01289408.mRNA mRNA downstream 22136 1285074 ~ 1289408 (-) True CI01000034_01286141_01289408
CI01000034_01234426_01238796.mRNA mRNA downstream 72748 1234378 ~ 1238796 (-) True CI01000034_01234426_01238796
CI01000034_01150993_01154752.mRNA mRNA downstream 156792 1150929 ~ 1154752 (-) True CI01000034_01150993_01154752
CI01000034_01323481_01381800.mRNA mRNA upstream 10598 1323378 ~ 1383472 (-) True CI01000034_01323481_01381800
CI01000034_01398718_01404884.mRNA mRNA upstream 85938 1398718 ~ 1404884 (-) True CI01000034_01398718_01404884
CI01000034_01498024_01498299.mRNA mRNA upstream 184300 1497080 ~ 1499836 (-) True CI01000034_01498024_01498299
CI01000034_01603228_01604932.mRNA mRNA upstream 289654 1602434 ~ 1605430 (-) True CI01000034_01603228_01604932
CI01000034_01621979_01623991.mRNA mRNA upstream 309009 1621789 ~ 1624069 (-) True CI01000034_01621979_01623991
TU194720 other downstream 234322 1072584 ~ 1077222 (-) True G171395
TU194626 other downstream 727261 577872 ~ 584283 (-) True G171318
TU194534 other downstream 1044298 229404 ~ 267246 (-) True G171229
TU195117 other upstream 551338 1864118 ~ 1866373 (-) True G171755
TU195220 other upstream 1129041 2441821 ~ 2446293 (-) False G171835
TU195221 other upstream 1129041 2441821 ~ 2446293 (-) False G171835
TU195219 other upstream 1129139 2441919 ~ 2446293 (-) True G171835
TU195214 other upstream 1197033 2509813 ~ 2510031 (-) True G171834

Expression Profile