RNA id: CI01000034_01323481_01381800.mRNA


Basic Information

Item Value
RNA id CI01000034_01323481_01381800.mRNA
length 5048
RNA type mRNA
GC content 0.46
exon number 26
gene id CI01000034_01323481_01381800
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1323378 ~ 1383472 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAGCAAAATCGTTGGCAGAAACAGATAGTTTCTGTTTACGAGCGATCGAAAATTTATGGGAGCAAACCATAATATTATTTTTCTGATTATGTACGGTTCGTTGTAGTGCACAATGCGAATGTATGATGTTTCCACTTCTCGCGCACTACGGGTTTGTTTATGTTCATTCTCCACTTGTGTTCAGTTTGTTCTGAAAGTTTTTTTCGGTCTAGTCGTGGAAGATGTGGCTTTTCAGAGTGGGACGTGGATGCCACGTCCTCGACGCGTCTCTGTCGGAGCGGAGCGCGCGCTGCCTGTATGGTGCGCGTGATTGATTCCACAGGTGGATACTTGGAGGAGATCAGGGTTATTGCTTGCCATGGACTTTTTAATACTCTTATGAGTTGACCTATATAGACAACATCTATTCAAACTACAAATGATTAGTACTGTAGCTGTATAAAAATAGCAGCACCTCTATTTGATGGAGTTATTCTACGAAATAAATGCCTTGTATGTGGAAAAAGGTGATATTTAAAGTGCACTTCTTTAAGATTTTAAACATTCTAGTGACTTTTAAAATTAAAAAAATATTAAATGCATTGATACATTTTGTGATATATTGGAATATTATAGTTCCTTTAAAAGATGGATGTAACAGGGTTGGCAGTTTTACAGTTAATTTTTTCATAAAAATACAAGACTCTGCATTGTTAAAGTCATTGTTAACACATAAACTTAACAAGGAACCCTTACTTGGATGGAATGGAGATATGCTGCATGTTTTATTGTTCTGTTAAACAGAATATATTACTTAAAGGGTCATTGGTAACACTTTGCATTACTGTGAAATAGATATTACAAAGTTTCATTGTTGGGCCCTGAAGGTCTGTATCGAGACACGATTCTCTTGTATTCCAACCGGATGATCTGAAAAGGTGACCAAAGGAAATTTTTCTCCTTCTGTTCGCCTGGCTCAAGTTCTGTGATACACTCAGACTTTGAATCAGTGGTAGTCAGTGCATGACAGAACTTTGGCCCGGCCGGACCCAGTCGAGAGAAAGCCAACAAACCTTCTCTTTTTCATCGTCTTTTTTTCTGTCTGTAGTCAGAAACAATAGTATTTTAATGTGTATTTATGACAAAACAAAACAAAATCCCCATAATGTTGAATGCGTGAAAATAATGTTGATTTATTTTCAACCAGGAACCCTCGCTGTACACAGTGAAGGCTGTCTTCATCTTAGACAACGATGGAAACAGACTGCTTTCAAAGGTGCTTAGACCCTTTTCCCTTTCTGATATTCTTTCTTTCTACAGAAGATGGAAAATATTTTCAAAATTATTTTGAATTGCTCTGAACAATGCACATTTTAAACTATTAGCACATGAGCCATTCAATATTTAATACATGGAAGAGAACAGAGATAGAATCTTATTACTTTAGAAAGAGAAATGAAGGAACTTGATATCTAATAAAAACATAATAAAACATTTATAAAATATTTTATGTGTATTTTGGTTATTCAAAATGAAGCTTTATGTCAGTTGAGGTGCTTAATCGTGTTCCGAAATCTGAATTCCTGTAGGGTTTAGTTCCAGCACTAATCAAACACACCTTAACCAGATAATCCAGGTTTTTCATCTCCTCCTTTATCTGCCACTGAAACATTTTACTTAGGAAAAACAGACATGATTATGAATAACTATATACTACTGTGCAATTATGTATGTACTCATGTGCAATTACAGTACTATGATCCAGAACTCTACCCTTCCATGAAAGAGCAGAAGAATTTTGAAAAGAACGTCTTCAACAAAACACATAAAGCTGACAATGAGATTGCCCTCTTAGAAGGGATGACAATAGTCTACAAGAGCAGCATAGACTTGTTCTTCTATGTAGTTGGCAGCGTTCAGGAGAATGAGCTCATGTTGATGGCAGTGCTGAACTGCTTGTTTGAGTCTCTCAGTCTGATGTTGAGGAAGAATGTGGAGAAAAGGACTCTGCTGGATAATATGGACGGAGTGTTCCTAGTGGTGGATGAAATCATCGATGGAGGGGTGATCCTGGAGAGTGACCCCCAACAGGTCATTGAGAAGGTCAACTACAAGTGTGTTTCGGAGCAAGCGTATGGCTTCGTCCTTTTTGATTACATCACTGGCAGACGACAGCCCATTATCAGAACAGAGTGTGGCACAGGTCTGAAATGTTTCCTTTTCTGTCTAACCGTCATTAACGCCTGCACCGTCATTAACATCTGTATCGCCTGTCTCACTCTAACATTTGCCACTAACTCTAACCTCGACAGCACATCACTGAGAAACTGGCTCTCACCTCTAATAGTGTCATGCTTGACATGGGGAAATGTAACTGCTGCTCTGTGTGGAATAGCTGATGGAGTCGTCTGCCAACTCCGCGTCACCCAATCAGGGCGCACAGACAAACACATGGTCCGCGGGGCTCCTCAATACCCTCGCGTGCCGCACGCCCCATTTCAAATAAACACCCGGGTCCACTTGGCGCAGCGAGACCCGCCATCTGCCCAAACAGAGCACGCGGAAAATAAATGCCGCTCTCCTAAACAAATAAACCCTCGCGCCATTCAGAACGCTCGAGCTCGGCGCGAGATGGAAGCGAGGGATAGGAAAAAACACGATTTATCCTCGCGAAGGCAAACCTGCGCATCAACCTTCCATCCACTAGAGGGCGATGGAGCATCAAAATGCAGTTGGACCAGGCAGGATCCGAAACTCAGACAGGAGGTTCTGAGGCCTTGTTCCTGGCTTACCTTTCCTCATATTTCAGTGGGTTGCGACCTCAAAATGTCAAAACTAGAGTTGTGGAGATGCGAACTGAAAACTGAAGAGAGGCTGCGCCTAATGGAAAATACTGCTTTAATGAGTTACAGGATCCACTTTGTTCCAGCCCAGAGCTGCTTCCCTCCTCTCAATCCTGGAGAGGCCTCTCTTTTACAACCTCAGGTGCTTCTGGATACACTTAATGCTCACTGTATGTCACCTGGGACTGCGTGGGGTCAAACCTTACCTGACCTCTCACTGGTATCTGTGCTCAGCCAAAAAAAGAAAGAACGAGAGAGCTGTCACGGATCTGCGCGTGGCCATGACCGGCATGATAAAGAACCGGACGGTATTTCGGCGAGGAAAACGGCTAATGGGCGAAAGATGAGGAGAAAAACAATAGCAAAGCGCATCCTGTACAATGGATACGAGGGATACGAAGAGACACCAGAAGACACCGGCGCGAGAGCGAACCACGTCTTCAGTCAAGAACCGGCGAAGAGGAGAAAATGGAGAGGACTGAATGGAGAGGACATCTCATCTTGTAATGCTGACTATATTAAGTTCAAAACAAAGGCTTTTGAGGTTGACAAGCCCCTTGGAGATGCAACAAGGGATGCAGATTTTACTATGGAGGTGCTCGGAAGCCTCCAATCACGTTCAAGGGCGGAGCTTATCGCCATGGTGCTGAGTATGCAGAGGGAGATGGATGGCCTTCGAGAGCAAATCAGGAGCCTAACAGCTTGTGGGAAGTTGGCTCAGACACTCGAGGAGTTGATCGAGAGGAGTGATAGATGGCTGTGTGGCAGCCACGAAGCTGCAACTCCCAGCATTCCAAGGGAGCCCGAGAGAAGCAGGCCACCCAGTCACATTTCTCCTCCAACAGTGCTTAGTGGAAGAACAGCTGAATGTGCAAGTTCAGAGCAGCAGGGGTGTGGTCAGTATGAGGTCACACAAACAATGCAAACGCAAAGGAATGAAACGCTTCTGGAACAAAAAGTTATCACTGCTGATCTTCTGGAGCGCTGCAACACAGGGACCACCGCTCAGAAACTCACCAATGACCTGCTGCGCAGCCTGTACGACAGAGACTGTCTGGCTTCTCACTCAATCTCAGGCATCATTAACAGCAAGCGAGGGACGCCTAAGCCAGCTCTTCCGGCACATGAGATCCAGGCCATTCTGAGGACAGTGCAGCGGTTCTTCCCCGGAAAGACGGATTCGGAAATAAAGGGCTACATTCGACAGAAGCTTCAGAATGAGGCCAAGAGGCTTCGGAAAAGGCCACACCCAGCTGATAATCCATTGAAGCTTATTGAATCGGCTGCTTGTAAACGTACAGGTTTTTTACCTTTCCAGACAGAAGCACGCAGGCTCCTGAAGGCCAACGGCTGTGTGAGTAAATTAACCCCGCACTCACCAGCTGTATCACTGCACACACCCCTTTCTGGGGGAAAAAAACACATCACCGAACACATGGCACAAAGGACGGCGTGGGAACTGCATATGATTGGGGTTCGGGAAAACAACGGCGTGGCACTGGGGACGATATCTTCACCGATCCAGCCATCTTACAGACCTTGCCTATATTTCCACTCACTAGATCTGCTAACAGCAAATCAATGGGCTTCTTTTGTTTCTGCAGGTTCAGACATCCTCATTGTGTCATTGTGTTATCGGCGCCGTGCTGCCAGGCTCTGGAGCCATGGGGAGAAAATCTCAAGGACAGGGAGTGAGGAGACGGAGCCCTCCGGGCAGGTTCTGGACGCCACTGTCAGCTACAATGGACAGCTGTTGCCCAGGACTCCCAGGTGCTGCGGCGTATCACATTTCCATGTTCAGTCCCCAGAACGCTGCCAGTCAACATGCCGAGAACTCGGAGCGAAAGACCGTCTGTGTGTTGGAGGATTGATACACGTCCAGAACATCATCTGCATTTCCAGCTGTGCAGATCTGGACTCACTGATGAGTAGAAAAAAGAATCCGAAGAAGAAGAAGTTCTGCACTATTTATCCCGTCAGACTATCAATCACTGTCGCTCTCGCTGCCCCGTCTTGGGCGCAAAGACAGCGCTACGCGGCCAGCCATTTGTCAAAGCGGCCCCGGAGGCTACGCATGGCTGTGTCCGGGGAGGACGGCCTGTCGTCGGGCCGACGTGGATGAACGAAAGCGCTATGCAAATTAGCGGCTAATCTGTGGCGGAACACAGGCGCGCCCGGCTCGCAGGTTCCATTACTCCTCTTTAGCTCGGTTGATTATGATTAAA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process

KEGG:

id description
K20472 COPZ, RET3; coatomer subunit zeta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194918 lncRNA downstream 75025 1248143 ~ 1248353 (-) True G171582
TU194908 lncRNA downstream 125108 1197978 ~ 1198270 (-) True G171572
TU194730 lncRNA downstream 195735 1126485 ~ 1127643 (-) True G171405
TU194885 lncRNA downstream 200659 1122417 ~ 1122719 (-) True G171549
TU194729 lncRNA downstream 242382 1078362 ~ 1080996 (-) True G171404
TU194972 lncRNA upstream 16852 1400324 ~ 1401912 (-) True G171631
TU195064 lncRNA upstream 327206 1710678 ~ 1710957 (-) True G171704
TU195072 lncRNA upstream 357172 1740644 ~ 1741140 (-) True G171712
TU195086 lncRNA upstream 381029 1764501 ~ 1768078 (-) True G171724
TU195093 lncRNA upstream 397374 1780846 ~ 1781056 (-) True G171731
CI01000034_01312431_01312780.mRNA mRNA downstream 10598 1311544 ~ 1312780 (-) False CI01000034_01312431_01312780
CI01000034_01308438_01309828.mRNA mRNA downstream 12499 1308319 ~ 1310879 (-) True CI01000034_01308438_01309828
CI01000034_01294226_01301994.mRNA mRNA downstream 21384 1294176 ~ 1301994 (-) True CI01000034_01294226_01301994
CI01000034_01286141_01289408.mRNA mRNA downstream 33970 1285074 ~ 1289408 (-) True CI01000034_01286141_01289408
CI01000034_01234426_01238796.mRNA mRNA downstream 84582 1234378 ~ 1238796 (-) True CI01000034_01234426_01238796
CI01000034_01398718_01404884.mRNA mRNA upstream 15246 1398718 ~ 1404884 (-) True CI01000034_01398718_01404884
CI01000034_01498024_01498299.mRNA mRNA upstream 113608 1497080 ~ 1499836 (-) True CI01000034_01498024_01498299
CI01000034_01603228_01604932.mRNA mRNA upstream 218962 1602434 ~ 1605430 (-) True CI01000034_01603228_01604932
CI01000034_01621979_01623991.mRNA mRNA upstream 238317 1621789 ~ 1624069 (-) True CI01000034_01621979_01623991
CI01000034_01625293_01629938.mRNA mRNA upstream 241228 1624700 ~ 1631372 (-) True CI01000034_01625293_01629938
TU194733 other downstream 5124 1318049 ~ 1318254 (-) True G171408
TU194720 other downstream 246156 1072584 ~ 1077222 (-) True G171395
TU194626 other downstream 739095 577872 ~ 584283 (-) True G171318
TU194534 other downstream 1056132 229404 ~ 267246 (-) True G171229
TU195117 other upstream 480646 1864118 ~ 1866373 (-) True G171755
TU195220 other upstream 1058349 2441821 ~ 2446293 (-) False G171835
TU195221 other upstream 1058349 2441821 ~ 2446293 (-) False G171835
TU195219 other upstream 1058447 2441919 ~ 2446293 (-) True G171835
TU195214 other upstream 1126341 2509813 ~ 2510031 (-) True G171834

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00052667 False 2887 lncRNA 0.40 7 NC_007114.7 24134446 ~ 24145250 (+)
bowfin (Amia calva) AMCG00016658 True 735 mRNA 0.53 9 CM030122.1 26967410 ~ 26974651 (-)