RNA id: CI01000034_01603228_01604932.mRNA


Basic Information

Item Value
RNA id CI01000034_01603228_01604932.mRNA
length 2228
RNA type mRNA
GC content 0.46
exon number 2
gene id CI01000034_01603228_01604932
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1602434 ~ 1605430 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAACATTACAGTAGGAAGACAACGCATTCCTCACTAAATTCGCGTGATTAAAACTAGAAACTAAATGCAGCTGGTAAGTGAAGAGATGAGAGGAGATGAAGGCCTAAATCTCAATGCAAAATTCTGAAACGTTCTTTCTTTATTTCTCTTTCTCTCATTCGGAGAGTCTTTCACGCAGGGTTTGACATATTCTAGCTGTTATCAGATTGATGGGCTAGTTTGATTGAAGTGGCTTTGTCATGCAAATGTCAAGCGCGTGATGGATGGTCGCCGTGCGCTGACAAACTTCTGGAGGTCCCCTCACCATTGGCGCCGTGACGTCTCACGTGACCAGCAGCTGAGGTAAAGATGTGTTATAGAGAAGCACGAGCAAATACTCAAGAGGTAAGCATTTCCCCCCTTCCGCATGACATACTGTTGCGAGCTTGCAGGACAGGAGGCTCTCCCGATCTCTTAGGTTGACCCTCCACCATTAATAGCGCATGGACAATTCCAGAATGAACTCTTTCTTAGAGTACACAATTTGTAACCGTGGGACGAACGGCTACGCGCCCAAGGCTGGATACCACAACTTGGACCAGGCGTTCTCGGGGCCCTTCCACACCGGACACGCAAGTGACAGCTATAACGCTGATGGACGACTTTACGTAGGGGGGAGCAACCAGCCAACAGCAGCAGCAGCACAACATCAGCACCAGAGCGGCGTTTACGCGCATCACCAGCACCAAACGCATCAGAGTAGCATTGGCCTCACCTACGGTGGCACGGGGACTAGTTATGGGACCCAGGCCTGCGCCAACCCGGACTATGCTCAACACCAGTATTTCATAAACCCTGAGCAGGATGGGATGTATTATCACTCATCGGGGTTTTCAACCTCAAATGTCGGTCCTCACTACGGCTCCATGGCTGGTGCATACTGCGGGGCGCAGGGAGCCGTCCCAGCCGCACCTTATCAGCATCATGGATGCGAAGGCCAGGACCACCAGCGAGGCTTCTCACAAGGCACCTACGCCGACTTATCGGCTTCCCAAGGGAGGGAGAGGGACACGGATCAGTCGCCACCTGGGAAGACATTCGATTGGATGAAAGTCAAAAGGAACCCCCCTAAAACAGCTAAAGTGGCCGAGTACGGACTGGGACCGCAAAACACAATTCGGACGAATTTCACAACCAAACAACTCACAGAGCTCGAGAAAGAGTTTCACTTCAGCAAGTATCTCACGCGAGCGCGGCGAGTCGAAATTGCTGCCACGCTCGAGCTGAACGAGACACAGGTTAAGATATGGTTTCAGAACCGCCGGATGAAGCAGAAGAAGCGAGAGAAGGAGGGACTCGCGCCTGCTTCGTCCACCTTGTCTAAAGACCTCGAGGATCACTCTGATCACTCAACTTCAACATCTCCAGGAGCTTCTCCAAGTCCGGATTCATAACAGAGGACAAAAGCTTTGGGTGCATTGAACAACAGATTCGAAATATATCGCAAAGTCTATTAATTTAAGCATTCCAAAATGTGCCAGAAAGACTTTCTCGTGCTCTTTTATTATAGGACAATTCGTTTTTAGGACACTGAACGTCAGGCGAGAAGTGAAAGAGACTTTTAGCACAACAATGGACATATTACACCGTCTGCTCGAACTAAATTTCCAAAACTCATTGGAAACGTTTGTGTGTGTTATACAGGGTATTTCTACAATGATGATAAATATAATGCACTTTCACACTGTTTACAAGTCTCTAAACGAACCTAACTGAATTTACAGGGAGCCTAGGCTATGTTTTCAAAATATGTATTGATGTTTTTGTTGCGTTTATGATGATTGATTTGATGTACACATTTCATATATCTGTGTCTTGTGGATTGTAGCTTATGAGGGTTTTCGGACTCCTTGCACTATGCGTTTACAGGGTAGGCCTTTACTGAACACCAGCACAATTATGTGTGAATGATTCCCTCTCAATGTACACTGTGATATTCCATTAGCAGTTAATTTACAGCGAGAAATAATTAACACTGTGTTCCATTCCGTTTGTAGAAAAAAGGACAATGCAGGGTGTTTAAATGTACTTTTCTTTATTAAAACATTTACAGAATTTGATTTTTTTAGCCTAGTATTTTTATGCGCAGACGAGCTGAGTTTTATTAGTTACTGTCTGCATGATTCATTCCGTAATCTAAATGTCTCAATCAAATGTTTATGTCAGTTCTTTATCTACCTCAAATAAA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09301 HOX_1; homeobox protein HoxA/B/D1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194972 lncRNA downstream 200522 1400324 ~ 1401912 (-) True G171631
TU194918 lncRNA downstream 354081 1248143 ~ 1248353 (-) True G171582
TU194908 lncRNA downstream 404164 1197978 ~ 1198270 (-) True G171572
TU194730 lncRNA downstream 474791 1126485 ~ 1127643 (-) True G171405
TU194885 lncRNA downstream 479715 1122417 ~ 1122719 (-) True G171549
TU195064 lncRNA upstream 105248 1710678 ~ 1710957 (-) True G171704
TU195072 lncRNA upstream 135214 1740644 ~ 1741140 (-) True G171712
TU195086 lncRNA upstream 159071 1764501 ~ 1768078 (-) True G171724
TU195093 lncRNA upstream 175416 1780846 ~ 1781056 (-) True G171731
TU195113 lncRNA upstream 222166 1827596 ~ 1830627 (-) True G171751
CI01000034_01498024_01498299.mRNA mRNA downstream 102598 1497080 ~ 1499836 (-) True CI01000034_01498024_01498299
CI01000034_01398718_01404884.mRNA mRNA downstream 197550 1398718 ~ 1404884 (-) True CI01000034_01398718_01404884
CI01000034_01323481_01381800.mRNA mRNA downstream 218962 1323378 ~ 1383472 (-) True CI01000034_01323481_01381800
CI01000034_01312431_01312780.mRNA mRNA downstream 289654 1311544 ~ 1312780 (-) False CI01000034_01312431_01312780
CI01000034_01308438_01309828.mRNA mRNA downstream 291555 1308319 ~ 1310879 (-) True CI01000034_01308438_01309828
CI01000034_01621979_01623991.mRNA mRNA upstream 16359 1621789 ~ 1624069 (-) True CI01000034_01621979_01623991
CI01000034_01625293_01629938.mRNA mRNA upstream 19270 1624700 ~ 1631372 (-) True CI01000034_01625293_01629938
CI01000034_01648924_01649935.mRNA mRNA upstream 43468 1648898 ~ 1650403 (-) True CI01000034_01648924_01649935
CI01000034_01652735_01654473.mRNA mRNA upstream 46847 1652277 ~ 1655606 (-) True CI01000034_01652735_01654473
CI01000034_01666303_01667765.mRNA mRNA upstream 60634 1666064 ~ 1667900 (-) True CI01000034_01666303_01667765
TU194733 other downstream 284180 1318049 ~ 1318254 (-) True G171408
TU194720 other downstream 525212 1072584 ~ 1077222 (-) True G171395
TU194626 other downstream 1018151 577872 ~ 584283 (-) True G171318
TU194534 other downstream 1335188 229404 ~ 267246 (-) True G171229
TU195117 other upstream 258688 1864118 ~ 1866373 (-) True G171755
TU195220 other upstream 836391 2441821 ~ 2446293 (-) False G171835
TU195221 other upstream 836391 2441821 ~ 2446293 (-) False G171835
TU195219 other upstream 836489 2441919 ~ 2446293 (-) True G171835
TU195214 other upstream 904383 2509813 ~ 2510031 (-) True G171834

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049967 True 1507 mRNA 0.46 2 NC_007114.7 23768898 ~ 23771142 (+)
bowfin (Amia calva) AMCG00016735 True 804 mRNA 0.57 3 CM030122.1 28918116 ~ 28929190 (+)