RNA id: CI01000034_01652735_01654473.mRNA


Basic Information

Item Value
RNA id CI01000034_01652735_01654473.mRNA
length 2326
RNA type mRNA
GC content 0.45
exon number 2
gene id CI01000034_01652735_01654473
representative True

Chromosome Information

Item Value
chromosome id CI01000034
NCBI id null
chromosome length 5914002
location 1652277 ~ 1655606 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGACGCACAGTCACAAATTCGTATCTAGGGGAGTATGTAGTTGATGTATAGGCTACATTCAACTTCAACGGGCAAAGAAGATGACATTTTAACTGTTGGTTTGTCATTGTTATTAATATTACGACAGTTTGGTAGTGAAATATTAGCAGGAACGAAAGTTTTTTTTTTTTTTTTTCCTTAGCTACTACAATTTTTTTCTGTAAATGTAAGATTTAAAGGGCGTTCACGATGTCACGTATTTTGTGAGACTTTTAAAGAATTTGAAATGAGCAAAAGAAGTTTGTTGAGATTTGCACTGATTAATAATCATCTGAATGCCGTGTTTAAACATCACTATCAGTAAACAACGAGAAATATTTGCTGCTGGTGTTAATAGTGAATTGAGCACATAAATTACTATTCATTGTGTGTAGATTTGGCATACAGGATAAACGCGCTGTTTGGAGTGGAATGACTGCAGACTACGTTTAAATGCAGAAGGTCTCCTTTGTGATTTAGGAGGCTTTGTAACCTGAATTAGTTGATGAATTTTCTATCGATCTTAAACAAGCCCAGATTCATCTCTGACACGCTGCTCACGCCACGACCATTCTCTCACCGTTATTAGCGAGTGCATTTAAGACCTTGGCCAAGGCGATTTCCTTGCATCACTTTCCCCTGGTACCGCGTTTCATGAACACTAGGCAAAATTTAGCAGTATTTTAGTTCGCCAAATCTGAACAGTTCTTTATAGAGGTGTAGTCATGTTCTCAGTGTGCAGATGAACTGAGGGGGACTGGGGGCGTGACTTTCTGTAGGGCTGGTAGAATCCAGCATGCCTTTTCGCTGTCTGCTTTCGCTTGTTATTGTTTTGATTCACTCACTATCTCATCAAGCGCACGGCAACGTATGAGAAAGTATGTAATTTTGGACTATTCCGAAATGTGAGTTGATGAGCGCGATCTAAACTGACTAATCCCATTTCCTTATCCGGGAATCGCGAAGACCCACGCTATTGGCTGACGATGTCACATGGACCCTTAACTTTGTTCACTTGACAGAAAGTAGGAGGGTTCTACGAAACAGGAAAACGAGTAAAGGGATACATATAAATTTTAGTATATTTTGTGTGCAATTCAAAGAAATTAATGGCCATGAGTTCCTATTTGATCAACTCCAACTATGTGGACCCTAAGTTTCCACCCTGCGAGGAATATTCCCAGAGCGACTACCTACCCAGTCACTCTCCGGACTACTACAGCGCCCAGAGGCAAGACCCCTCGTTCCAGCATGAGCCGATCTACCACCAGCGGTCGGGCTGCGCCGACCCACCCTACTCATCGTGCCAGGGTCCGGGGCAGCCTGCCGCGGTCATCTCTCCACGAGGTCACGTTCTACCCACAACCGCACTCTCAACCCCTCTCCCTGAACCAAGCCATCACTGCGACTCGGTAACTCCAAGCCCTCCGCCTGCCTGCGGTCAGACTCCTACTAGCCAAAACACTTCAACGGTCACCTCAAGAAAAGATCCCGTGGTATACCCCTGGATGAAAAAAGTCCACGTAAACATCGTGAGCCCGAACTATTCAGGGGGTGAACCAAAGCGCTCACGCACAGCATACACGCGGCAGCAAGTCCTGGAATTGGAGAAAGAGTTCCATTACAACCGCTATCTGACCCGCAGACGGAGGGTGGAGATTGCCCATACACTATGCCTATCCGAACGACAGATTAAGATATGGTTTCAGAACCGGCGCATGAAGTGGAAGAAGGACCATAAGCTTCCCAACACCAAAATACGCAGCAATTCTGCCAACACTAATTCAAGCGGCGGCCCGACATTGGGCAGCAATCAGAACCGAGCTAGTGGACCTCCGCCAAGTCTATAGCCCTCCACTGTTGCCCAAAACATGTACAATTATAAAAATCTAATTTTATGGAGTATAGAACGTGGATTTTACCCGCGTTATGTCTCCTTACTCTCCCCTGCACTCTAATTGCAGGGATAAAACACAAGGAAGATGTGGGGGGAAGGAGCAAAGAAAATGTTCATCTTTTAAACACTACAAATGGGTGAAGAGACTGAAGACTCGAACTCAAATGCTACTATAGATGGGTTGCCTTCCCAGTCTGGTTCCCATTTTTATCCCGCACGCCTTTTCCTGCTCACTCGCCCCTTCCATAAGCACAGAAGGCGGCAGATAGTTTTCAGATTGGGTGAAGATGGATCCGTGTTTCATCTTTAATCACGCCAAACTCGGCCCCATTTGTCATGTTTACTCTGTGGTACAAAGGATGAACCGTAGGCCTGCCCATTACCTCGACGTCTAGCGTTGTGCTTAATAAA

Function

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09304 HOX_4; homeobox protein HoxA/B/C/D4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU194972 lncRNA downstream 250365 1400324 ~ 1401912 (-) True G171631
TU194918 lncRNA downstream 403924 1248143 ~ 1248353 (-) True G171582
TU194908 lncRNA downstream 454007 1197978 ~ 1198270 (-) True G171572
TU194730 lncRNA downstream 524634 1126485 ~ 1127643 (-) True G171405
TU194885 lncRNA downstream 529558 1122417 ~ 1122719 (-) True G171549
TU195064 lncRNA upstream 55072 1710678 ~ 1710957 (-) True G171704
TU195072 lncRNA upstream 85038 1740644 ~ 1741140 (-) True G171712
TU195086 lncRNA upstream 108895 1764501 ~ 1768078 (-) True G171724
TU195093 lncRNA upstream 125240 1780846 ~ 1781056 (-) True G171731
TU195113 lncRNA upstream 171990 1827596 ~ 1830627 (-) True G171751
CI01000034_01648924_01649935.mRNA mRNA downstream 1874 1648898 ~ 1650403 (-) True CI01000034_01648924_01649935
CI01000034_01625293_01629938.mRNA mRNA downstream 20905 1624700 ~ 1631372 (-) True CI01000034_01625293_01629938
CI01000034_01621979_01623991.mRNA mRNA downstream 28208 1621789 ~ 1624069 (-) True CI01000034_01621979_01623991
CI01000034_01603228_01604932.mRNA mRNA downstream 46847 1602434 ~ 1605430 (-) True CI01000034_01603228_01604932
CI01000034_01498024_01498299.mRNA mRNA downstream 152441 1497080 ~ 1499836 (-) True CI01000034_01498024_01498299
CI01000034_01666303_01667765.mRNA mRNA upstream 10458 1666064 ~ 1667900 (-) True CI01000034_01666303_01667765
CI01000034_01670204_01671915.mRNA mRNA upstream 14297 1669903 ~ 1671935 (-) True CI01000034_01670204_01671915
CI01000034_01675050_01677339.mRNA mRNA upstream 19187 1674793 ~ 1678699 (-) True CI01000034_01675050_01677339
CI01000034_01680053_01683539.mRNA mRNA upstream 23983 1679589 ~ 1683539 (-) True CI01000034_01680053_01683539
CI01000034_01684215_01687260.mRNA mRNA upstream 28571 1684177 ~ 1687260 (-) True CI01000034_01684215_01687260
TU194733 other downstream 334023 1318049 ~ 1318254 (-) True G171408
TU194720 other downstream 575055 1072584 ~ 1077222 (-) True G171395
TU194626 other downstream 1067994 577872 ~ 584283 (-) True G171318
TU194534 other downstream 1385031 229404 ~ 267246 (-) True G171229
TU195117 other upstream 208512 1864118 ~ 1866373 (-) True G171755
TU195220 other upstream 786215 2441821 ~ 2446293 (-) False G171835
TU195221 other upstream 786215 2441821 ~ 2446293 (-) False G171835
TU195219 other upstream 786313 2441919 ~ 2446293 (-) True G171835
TU195214 other upstream 854207 2509813 ~ 2510031 (-) True G171834

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00049959 True 1235 mRNA 0.51 2 NC_007114.7 23721808 ~ 23723982 (+)